HsaINT0141193 @ hg19
Intron Retention
Gene
ENSG00000128482 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:12968]
Coordinates
chr17:19316593-19316994:+
Coord C1 exon
chr17:19316593-19316724
Coord A exon
chr17:19316725-19316889
Coord C2 exon
chr17:19316890-19316994
Length
165 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTCCCTACCCCCTGCATAGGTG
3' ss Score
9.73
Exon sequences
Seq C1 exon
GAGTCTGGTGAGGGCGGCCGGCCAAGAGGAGGAGAGGCATCCCTGCAGGGCTGCAGGTGGGGCGCCAATGGCCTCGCCAGGGGCATATGGATGTGGAGCCACCCCTTCTTGCTGGGGAAAGAAGGGAAGAAG
Seq A exon
GTGAGGGGGGAAGTGGCAGAAGGAGGTCAGGGATGGGAAGGGGAATCAAGAAGGGCGTCTCTGGGGTGAGGATAGAAGATGGGGATGGGACGGGGCAGGGTTGGGAAGAATGTGGGAGAACAAGGCAGGCCTGGCCCCTTGGGTCTTTCCCTACCCCCTGCATAG
Seq C2 exon
GTGGCGGTGTTCCTGGTGGACACAGGGGATGCCATGAGCCCTGAGCTGAGCAGGGAAACAAGGATCAAGCTCTGTGCTCTCACCACGATGCTGAGCTCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128482-RNF112:NM_007148:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(17.0=100)
A:
NA
C2:
PF0226314=GBP=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTGGTGAGGGCGGC
R:
CTGGTAGGAGCTCAGCATCGT
Band lengths:
237-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)