MmuINT0138997 @ mm10
Intron Retention
Gene
ENSMUSG00000036529 | Sbf1
Description
SET binding factor 1 [Source:MGI Symbol;Acc:MGI:1925230]
Coordinates
chr15:89302452-89302777:-
Coord C1 exon
chr15:89302605-89302777
Coord A exon
chr15:89302526-89302604
Coord C2 exon
chr15:89302452-89302525
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TGAGACCTGCTCTCCCCTAGACA
3' ss Score
6.87
Exon sequences
Seq C1 exon
CATGGCAGGCAGTGTGGCTGAGAGCTATGACACAGAGAGTGGCTTTGAAGATGCAGAGACGTGCGATGTGGCTGGGGCTGTAGTCCGCTTCATCAACCGCTTTGTGGACAAAGTCTGCACAGAGAGTGGGGTCACCAGCGACCACCTCAAAGGACTGCATGTCATGGTGCCAG
Seq A exon
GTATGGCGATACTGGTTTGGGAGCATGCCTTAGGTGAGTGGCTGTACGGGCCCAGGGTATGAGACCTGCTCTCCCCTAG
Seq C2 exon
ACATTGTCCAGATGCACATTGAGACCCTGGAGGCCGTACACCGTGAGAGCAAGAGGCTGCCCCCGATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036529:ENSMUST00000123791:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF152731=NHS=PD(21.6=70.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGCAGAGACGTGCGATG
R:
CCTCTTGCTCTCACGGTGTAC
Band lengths:
182-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types