RnoINT0130884 @ rn6
Intron Retention
Gene
ENSRNOG00000008392 | Sbf1
Description
SET binding factor 1 [Source:RGD Symbol;Acc:1307090]
Coordinates
chr7:130275555-130275880:-
Coord C1 exon
chr7:130275708-130275880
Coord A exon
chr7:130275629-130275707
Coord C2 exon
chr7:130275555-130275628
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TAAGACCTGCTCTCCCCTAGACA
3' ss Score
6.47
Exon sequences
Seq C1 exon
CATGGCAGGCAGTGTGGCTGAGAGCTATGACACAGAGAGCGGCTTTGAAGACGCAGAGACATGCGATGTGGCTGGGGCTGTGGTCCGCTTCATAAACCGCTTTGTGGACAAGGTCTGCACAGAGAGTGGGGTCACCAGCGACCACCTCAAAGGACTGCATGTCATGGTGCCAG
Seq A exon
GTATGGCGATACTGGTATGGGAGCATTCCTTAGACGAGTGGCTGTAGGGGCCCAGGGTATAAGACCTGCTCTCCCCTAG
Seq C2 exon
ACATTGTCCAGATGCACATTGAGACCCTGGAGGCTGTACACCGTGAGAGCAAGAGGCTGCCCCCAATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008392:ENSRNOT00000072955:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGAGAGCGGCTTTGAAG
R:
GTACAGCCTCCAGGGTCTCAA
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]