MmuINT0140023 @ mm10
Intron Retention
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:109825319-109829139:-
Coord C1 exon
chr7:109829035-109829139
Coord A exon
chr7:109825475-109829034
Coord C2 exon
chr7:109825319-109825474
Length
3560 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
CATTTTGTTTCTCCATACAGAGA
3' ss Score
8.86
Exon sequences
Seq C1 exon
ATGTCGTCACCGTCAGGACAAGTGTAACCTTTAAGCTAAATGAAGGCAAGTGTAGTTTGCAAAAGGCCAAGCTGTCTCCCGAGGGTCTACGACCAGCACTACCAG
Seq A exon
GTATGGAATCAAATGGCTGGTGCAGGGAGTGTCCCTGCATATTGGGTAAGGGACCTGTGACTAGCTGAGTGCAAGCACATGTTAGATGGCCCTGAGGTATTCAGAATCTGCAGGGAGGGACTTTCTTCTCTAGGGGAGGGAGCAGAGCCTGCCCTAACCCTTGTGTAGTTCTGGAGTTATACTTCAGGAGATTCTTTTTTTTTTTTAAAGATTTATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACGCACCAGAAGAGGGCGTCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGGCCCCCTCAGGAGGTTCTTTGTGAGGTCATTGTTGAAGCTTGGGGTAAACCTTGGAGTTCATGTGAGTCCATGGGGCTTAAGATGGCTTGTGACTGCATTGAGTTGAAGTTTTTAATCTTAGAGTTGAGTTGAAGCGTACACTATGGAAAAAATGTGGTTGACTCAGAAATGAGGGCCTTGATGAACAATGATGGAACATCCAGTGTTCTTGCTGCAATTTTTTTATTCTATATTTTTCATATTCTCTTTCCATTTTCATACTTTTCTGTAACTTCTATTAGACATGTTCTTTTAAAATTTCATACATGTCTACAGCGCATTCTGATTACTGACACCTACACACTCTTCCACCTCCCTCCCATCCCTGTTCCCTCTCCCCTTTCCTCCAAGTGATTTCCCACATCCATGTCTTTTTGTTTTGCTTTGTGACCAACTGAGATTAACCAGGGCCATTTGTAGCTGGAAGCTGTTGGGTTCATCAGTGGGCACACAGCTGAAGAGAATGGCTGTCCCTTCCTCAGAGTCATCGATCTTAGCGTACAGTTCAGTAGGGAGGGGTAGCACCCCAAGAGCCTCTCTGATCCATGGTTGACAGTTGGCAGGCCCAGTGCAGGTAATTGCAGCTACTGCACTATCGAAATTGCACTGGCTGTGTCGTGGCTGGAAGACAGTGTTTCACAGGCCCTCCCCTTGTCTTCCTTCTCTTAGATTCATTATATCCCCTCTTCCAAGATGTCCTCCAGGCCTTAACCAGTGACAGAAGTGTGCTGTTTAGGGCTGAGTCAATTTTTTATACCTTTAAATTAGGAAAGTATTTTTAATTTTATTTTATGTGTATGGGTGTTTTGACTTCATGTGTATCTGTGTACAACATATATATCTGGTGCTCAAGTAGGACAGAAGAAAAAGTGTTTGATGTCTTGGAACTGGAGTTACAAACAGTTCTGAGCCATCCTGTAGGTATCAGGAATCAAACCTAGGTCCCCCTATGAGAATAGCCAGTGCTCTAAGCACTAAGTTCTCTCTCCAGTGTCACTTCGTTTTAAAGATCTGTTTTTATTTTCAATGCTGTGGACACTTGTGGGTATGTATATATATGTATGTACATGGAAGTCTGGTGCCTGCGGAGCCCATGGGTGTCAGCTCTCTCGGGAGCCACCCAGTGTGGGTGCTGACGATCAAACTCTGGGCCTCTGCAGGGATGGTATGGGCTCTTAACCACCAAACTGTCTCTCCAGCCCAGGGAAGTATTACTTAAAAATAGATTTAGTCTAGAGTGTACTTAATAGATTGGACAAGTGCTGAAATCAGATGTTAACAGCAGGGTGGGCTGAGTGCGGGGTGTGCAAGAAGTCTGTGCTTTTCTGTAAATCTCAACTCACTTCAAAACACAAAGTTTTAAGCTAAATACAGTGACTCACACCCGTGATTCCAGCACTTGCGAGCTGAGGCAGGAGACTGTGTGAGTTCAAGGTCAGTCCTGAGTGCATAGTGAATTCCAGGCCGGCCTGGAGCACGGAGCGAACTTTGTATAAAAACAAAATAAATAGATAAAAATAGTTTTAAGGCCAGTGAGATGCCTCAGCTGGTCACGGTGGCTGCTGCCAAGCCTGGTAGCCTGAGTTGATCTCCCAAGACCCACACATGTGGTAGAAGGAGAAAACTGACTCCTGCTAGTTGTTCTCTGGCTTCCACATGTGCTCTCCTCACATGACACATGTGAACCGTGGTGTGTGTACAACTACTCACATAAGCGTACACACAACGTAAATCATGTGCAAATAGTTTTAATGTAGGTATTAGAAAGAAAGGAAAACAAGAGAAGCTTTAACATCCACTCACGCTTTTTTAATATCCAGTTATGCTCTTTAAAAATTATAAAATAGGACCGAAAAGATGACTCAGATGAAGGGCACTTTTCTAAAGGACCCAGCTTCAGTTCCCAGCATCCACACTGGGCAACTCTCAACTGCCTGTAACTCCAGCTCCAGGGCATCCCATGGCCTCTTTTGGCCTCCTTAAGACCTGCACATATGTTGCATATACACATATGCTCCATATACACATATAAAAAAGTAAAAATATGTTTTAAAACTATAAAATATATGTTTGGGGGGAAAGTATAAGTAGAAAATGAATCTGTCTCTCCCTCTGGTCCTGATAGTCTGTTGTCTTGTAATTAAAGTCTATGGCACAGATAACCTTTCGTTCAATAAAGTAAGTTTTAAAAAGACATGGAAATAGCTTGGTGGTGGTGGTACATGCCTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGTATCTCTGTGGGTTCCAGGCCAGCCTGGTGTACAGAGCAAGTTCCAGGACAGCCAGAGAGGCACAGAGAAACTCTGTCTTGGAAAAACAAAACAAAACAAAACAAAAACCAACCAACCAAATAAACAAACACCCCAAGACGTGCAAATAGATTTTGTGGATACATGTCCTGCTTTGCAGTTTGGTTCGGTTTAGCTTTGTCTATTGAGAGTCAAAAGATTCAGCAGAAGTGCTGGACTGAGAACAGGCAAAGGCTGGCTTAGAGCAAGCATTCCACTGATGCCCTAGATGGTTTCAGAGACTGTGCAGTTCTGTTGAATCTTTGTGCCATTTACTGTTTGTGGCGGTAACATGAGACACACCGTTGATGGCTGCTTTCTCTCCACTTGGGATGGAGTTGCACCGAGGTCAGCTGGATGAAAACAGTAGTGGCTTTCCATCCGTCCATTTGATGCTTCAGCGTCTGCTCTGGCTATCCCAGTCAGCTGTGAGAAAAACCACCATGAGAATGCCCCCACCTTATCCAACTGTCAAACAAAACAAAACAAAAAACAAAACAAAAACAAACAAACAAACAAACAAACAAACAAGAACTGGCTCGGCCCCCCTGGTTCTCATCCTCCGCTGTGGCTGGCCAGTGGGAGACATTCGGCCTTTACCCGTGAAACAATGTTCATGAGCTCAGCTGTAAAGTTACATAGGAATGAAAATGTCCCGGCTTCAGGCTAGGGACTGGCAATGGCTCGCTCGGCATGTGGAGTGAATCACGCACTCCCTAGACATTGTAATGAAATGTTTACTGAGCTCTAGCAAATGCTCAGCTCCGTGCTCTGTCAGGACTTGGCTTCCGATCATTTTGTTTCTCCATACAG
Seq C2 exon
AGAGGCACAGCTCAGTAAAAGAGAGCTTCCAGTACGCAAACCTTACATGCAGCCCTGGCAAGCAAGTCCCGGGAGCCCTTGGCCGACTGAACGCCCCTAAGGAAATGTTTATCACGGTTGAGTTTGAACGGGAAACTTACGAAAAGGAGGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279:ENSMUST00000106729:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types