BtaINT0129749 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020573 | SCUBE2
Description
signal peptide, CUB domain, EGF-like 2 [Source:HGNC Symbol;Acc:HGNC:30425]
Coordinates
chr15:44127772-44130345:+
Coord C1 exon
chr15:44127772-44127879
Coord A exon
chr15:44127880-44130189
Coord C2 exon
chr15:44130190-44130345
Length
2310 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
AATTTTGTTTCTCCATACAGAGA
3' ss Score
8.16
Exon sequences
Seq C1 exon
AAGATGTCGCCACCGTCAGGACAAGTGTAACCTTTAAGCTAAATGAAGGCAAATGTAGTTTGAAAAAGGCTGAGCTGTTTCCTGAGGGTCTGCGACCAGTCCTCCCAG
Seq A exon
GTATGGAATCAGACGGCTGGTGCAGGAAGTGTGTCTGCATGCCGGGGAAGGGATCTGTAGCCAGCAGAGCCCTTCAGATGGGATCCTACGGTTCAGACTCTCTATGGACTCTCTTCTCAAGAGGAAGAAGACCCCTGCCTGGCAGCTCCATATGCCCCTGGGGTTACACATTAGGACCTCCTTTGCAGGGTACAGAGGGTGAACCTCTGGGGAAATCTGTGAGTTAATAGCAATCAATATGGGCTTAAGATGCATTAGTAACTTGTGATCATATTGGGTTAAAATTTCTAGATCTTAGAGTTTGCTTAAAATATAATCCAAAGAAATGAAAAAAGGTTTGGCTCAGAAAGGATCATCTTCGGTGAACAAAAATATCATATCCAGCTTTTCTGCTGGATCTCATCTTTGGAGGCAGTGATGCCATTGGCTTCAGCAGAATGAATACTTTCCAAGTAGACCTGGCTTTATGGAAAGAGCAGCATCCAACATTCCTCTTTCTCCCCAGCTCACATTTCCAGTATTAGTTCATAGAATAATTTTAGAGAATAAAAGAAAAATCAGGATTCATGTATTAGGGAGGGTTCTTTCCCTAGTCTACCCTCAAATAAATCATACAAACAAATAAAAGCATAGTCACTGTAGTCACATCTGGCTGCCTATTTTAAGTAACTAACCAAGATTAATTTGGGCACCTCCATTTGATGGAATTGGAGAAGGAAATGGCAACCCATTCCAATATCCTTGCCTGGGAAATCCCACAGACAGAGGAGGCTGGGCACTACAGCCCATGAGGTCGCAAAGAGTTGGACACAACTTATCAACTAAGCAGCAACATTTTATTGAATATTACACAGCTATTAATTATGGGTTTTCTTGATGGAATATTATGCAGCTGTTAATTATGGGTTTTCAAAGAATGTTTAATGACATTAGAAAATGTTATAATAAAGATGAAAAAAAGAGTCACATTTTGTATATCTAATATAACCTAAACTGTGTAAAAAAAAAAAAAAGCATAAGTAGAAGAAAAACAAAGAAAACTCACCATGTCCTTATTAGTGGGTTAAATCTAGGTGGAAGGATGTTGAGTGATTTTAATTTTTTTGCTGAATTTTCCAAATTCCCCAATAGTGAGCATTTATACTTTTAATCAGAGGGTGAAAGCATTATTTAAAGATAGATTTGGTCTTTAGTTTATTTAATGATATTATACTAATGTTAATTTCTTAGTTTTGATAAAGATACATGTAAATATAAGATGTTAATATTAGAGAACACTGGATGAAGAGTATGTGAGAACTCTGAATACCCTCTCAGAAACTTTCCTATACATCTAAGCTTACTTCAAAATAAAAAAAATTTTTTAAATAGATATGAGAAAATAGAAAGTGAAAGAGGTTCAAAATGAACATCTATCCAGTTTGAGATTTGAAGTGAGCCTTTTGAGAGCTAAGATGGATCTTTAGGGAAAAATTAATTGCCTTCTCCTTCCTTTGACCCTGATGCCCTGCTGATTTGAACATCCTTATAATGTTAAGAGAAGAATATGATACAGATAATTCATCAGTTCAGTTGAGATTAGTTCATTGTATGGATAGTATGTGGATCTGCTCTTTGGTTCTGGTTAACAATCATTAGTCAAAAGATTCACTGGAAGTCATGGAATGAGGAGTGAGGGTCAGAAACGAGCATGTCCAAAGCCTTACATAACACCTTCACTCCCGTCCTGTGTGCCTTCATGACTGTTTGGATCTGTTGATCTTTGTGCCATTTATTGCTCCTGGTTATTTCAAAATGAGTCGTCACTGTTGATGTGCTTTCCAGCTTTCTCTTTGAGTTGGAATTACTCCAAGGTCAGTTTGCCTGAAAGCAGGAGTTAATTTCCTTTCTACTCTCATGCTCGTTCCGTACTTGAAGACTCAGCCCCTGCTTGAGGCATCATAGTTCAGCTTTAAAGAAATGAACCCTGAGAACATGAATGCACCTTAGCAAACCACCAGTCAGGAAGGCAAGACAACCTTTGGTTCCAGTCTTCCACATGTGTGGCTGGTCATTCAGAAACATCAAGCATCTGTTCATGAAAATCAGTTTCGAGAGCTAATGGTAAAGTTACATAGGAGGCAATACTGGCTCTTCAAGATTATAGTGTCATCGTGCTCCAGGCTGAGGGCTTGCAGTGTCTTGGCATCTGGAGTTAATCGTCTGGTCCCCAGAGAGCTGTTCTAATGAAATGTTTACCGAGTTTGAGCGAATGTTCAGCTGAGTGCTTTGCCAGGATTTGGCTTCCGATAATTTTGTTTCTCCATACAG
Seq C2 exon
AGAAGCACAGCTCAGTAAAAGAGAGCTTCCGCTACGCAAACCTTACATGCAGCTCTGGCAAGCAAGTCCCAGGAGGCCCTGGCCGACCGAACGCCCCTAAGGAAATGTTTATCACTGTTGAGTTTGAGCTTGAAACTAACCAAAAGGAGGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020573:ENSBTAT00000027416:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development