DreINT0131760 @ danRer10
Intron Retention
Gene
ENSDARG00000037362 | scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
Coordinates
chr7:28315984-28318749:-
Coord C1 exon
chr7:28318645-28318749
Coord A exon
chr7:28316146-28318644
Coord C2 exon
chr7:28315984-28316145
Length
2499 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTAATATCTATTTACTCAGATA
3' ss Score
5.97
Exon sequences
Seq C1 exon
GTTCGGGAATCAAAACCATTGCCACATTTAAATCTGGACAGGGGAAGTGCAATCTAAAGCGGAGTCATGAAAATCTTGCACATAGCTTCAAAACTGCCCTGTCAG
Seq A exon
GTATGTGTCTTGCATTGAAAATCACCACAGTTTACTACTAAAGTGCCAAATTGTTTGCAAAGGCAGTAAGTTTGAGTCTAAATCCGCCCTGTTGATGAAACACTTTGATGACTACATCAATCACATTACAAAAGCAAATAGGAAATAGCTTGTTTTTATTTTATTTCCTCTCTGAGTCTTTATGGAGATACAAAAAAGAGAGATGGAGAGAGCTGATTACGAACATATTTTGTAATAACATTTTCTCAGCAGATATATTAGAGCTGTGGTGAAAAATGATTCAAGAATCGATTTTGCATTGATTTACAAAATGCATTGTTATTCTCTATATTCTTGCTATTCTTTTCACACAGATTTATGCTTTACAAACAGCCGTACTTATCCAATTGCTTATAAATATCACTTCATTTTAAATAATCATTAAGAAAGTTAAGGAAGATTTAGGCAGATTACAAGAGTGTTCATAGTGGGACTTTCATAGTGAGACTCTTCCTCATCAGACTTTTTGTGTATGGTTAAAAGCTAGCCTAGATTATGATCTGCTGTTACTTAGCTGTTTGGAATACTTAATTCTGATTGGTCAGCTGTGACATTCCAAGGTATATGTAGAGGGTGGGGCGTGCGTGGGTGTTAACTACTGTCACCTGTGCACCACAATGGTCACCAGTCTCATGGAAAAGCTCTGGAAACTTACCAGGAGAGACTGTAGTTGTCCATGTGGAGTTCTGCTGCGACTGTTTATTAAAATTGTTTAATGTTTGCTGGTTCTTCCGATAACTAATATCCATCAACTTAATTACAGTATGTTATTCCAAGATAACAACCGCTGAAACTAATAACACAGGCCCAATTGCGTACTTCGGAGCATCTTGAATACATTCACATTCATATATATATGCTTGTTTTTCTCACTGCTGTTTTTGACGGCTTGGCATCATCTTGTGACTGAATAATATGCAGGGTAGGGTATGCTCCATTTAACCATTTTTGTTTCTGTTAGCATTTGCCTTTTGCTCAGGAAAATGTTTTGTGTATATTTTTTAATAATCTATGGCAAGTAGCCATGTAATAATCAGGATAAAGTACACCCAGCCGGTAGTTTTTGCAGAATAAAGCTTTTCAGCATTATAAAACAGCAATCAGTGGTGGATTTAGGCATGGGCATAATGGGCGATCGCCCAGGGCGGCTTTTAGTTGGGGGCGGCATGGGGAGATGGTGCAAAAAAAATGCCCCATTATCAGCTGTGCCACAGTTAAAGCTTTAAGATACGATTTACTTTATGCAACTGTATTAATTTAGAGTGGTATGAAGACGTTAGGGGCCATTCACATTTGGTGTCTTTTGCACACGTAAGTTTGTTATTCTTTATGTGCAACGGAAACAACGCTGGAAAAAACAAATTGACGCATGCACTCAGAAAACCATTCCAGTGCACCTTACACGCGCAGTGGTTGTTTACATGCACGCCGCTAAAATACATGCCACTCATTCGCTGTGAAACCAGAGTAACAGCCTTTTGTGCAGGTTCTTCGAAGCATCATGACCATCAGTGAATGCATTCACATTTTCTATATGCTTGTCTGTCTCGCTGCTGTTTTTGACGGCTTGGTGCCATCTTGTGTTAATTAAAATTATTGAATGTTCACTGGTTCTCCCGATGACTAAAAGCCATCAATTTAATTACAGTGTGTCATTCCAAGATAACAACCACTGAAACTAATAACACAGGCTCCTTTGGGTACTTCGAAGCATCTTGACCATCAGTGAATACATTCACATTCATATAAATGCTTGTCTGTTTTGCTGATGTTTTTGACAGTTTGGCGCCATCTTGTTACTGAATAACATGTAGGTTAGGGTATACTCAATTCAGCCATTTTTGTTTCTGTCAGCATTTGCCTTTTGCACAGGAAAATGTTTTGTTTATATTTTTGAAAATTTTGTGGCAAGTAGCCATTTAATAAGCGGGATAAAGTACATCCAGCCGGTAGTTTTTGCAGAATAAAGCTTTTCATTATTATACAACAGCAATACATAATACAACTCTTTGCAAAGGGATGCTGATAAGCCTGTCTGACTTTTCTTTGCTGTTAGAACAACCTCCTGAATGTGCTTTATCCCTTAAACTGCTGTTAAAAGCTCAGAGTCAATTCAAGAGAGATTAGTGACATTTTGAAAATCACAAAAAGATTGAAAGATTTTTCCACGCAGCTCTGATATATATTGAAATAAAGGGCTGCATAATTTGCTGAATGTGAGAAAGATGTTTGTGTTAGAATCTAGTCTTCTGGTACTAGATGACCAGCCGTATTTGAAAGAGTTTTTCAATAGAGTCCAAGCAATCAATCACACTGACCTTCCGATCACAGTTTGAAAGAGTCCCACACCCCTTCAGTTGAAATAGTGTTTCCCCCCTCTGTCCTTTCCCTCTTCTGCCTTCTGCCTTTTTTATTGTAGTTCTTTTAAATCCATGAAGTCTTTAATATCTATTTACTCAG
Seq C2 exon
ATAAAAGAGCCACCGAGAATGTCCAGTTCAGCTTTGTTAGCCTGCACTGTGCCTCTTCAAGCAGACAGCAACGTAGCCGGCACGGGCGGAAGGCTGGCGAGGAGGAAGGCTCCTTCATTACTGCCCAGTTTGAGCTGGATGTGAACCTGGAGGAGGTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037362:ENSDART00000054366:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.218
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]