MmuINT0140896 @ mm9
Intron Retention
Gene
ENSMUSG00000029189 | Sel1l3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:MGI Symbol;Acc:MGI:1916941]
Coordinates
chr5:53523033-53527139:-
Coord C1 exon
chr5:53527012-53527139
Coord A exon
chr5:53523117-53527011
Coord C2 exon
chr5:53523033-53523116
Length
3895 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGA
5' ss Score
3.68
3' ss Seq
TTCTTCCTTTTCTTTTTCAGATG
3' ss Score
13.68
Exon sequences
Seq C1 exon
ACACTGGCTGGTGAATACTTCCATAAAGCTGCACAAGGTGGACACATCGAAGGGACATTGTGGTGTTCCCTTTACTATATCACCGGCAACCTGGAGACCTTCCCTAGAGATCCAGAGAAAGCTGTTGT
Seq A exon
GTAAGACTCTGTCAGATGTTGCCTTCCAGCGAGAACCTATGTCCTCTGTTCACCTTGTCTAATAAAAGGGATCTCTTTCATTTCCTCTTCCCCTCCCTCCCTCCCTCTCCCTTCCTCCTCCCTCCCTCCTTCCTTCCCTTCTTCCCTCTTTCCCCCCTCTCACTTCATTCCTCTTCCTACTTCCCTCCCCTTTCTGCTGATTTCTTTATGTCTCTTTGCACCTTTTAAAATTTAGTTTTTACCCTTATCAGTTATACATAAATATAGATTTAAAATAAGCAAACCAGCTAGGACTGGAGAGAGGGCTCAGAGGTTAAGAGCCCTTGCTGCCCTTGCAGAGGACCTGAGTTCGAGTCCCAACACCCACACAGCAGCTCATAACCATCTCTAGGCCCTCTTTTGACATCCTCAGCCACCACTCACACCTGTGTTGCCCGGACATACATGTAGGTGAAGCATCCATAAAACTAAAACATGCGATTGGAGTGTAAAAGAAGAGCAGATAATTGACAGGGGAAGAATTTTAAATTTTTAATTATAAAAATTCAGCAAGGCAAAACAAGCAACCCTTGACTCTACCCCTTACCCCACTCAGTTCCTGGTCCATAGAATAAGTCACTGTCTGACAGTTACTTATTCCTTCCTGGCCTCCACGTCTAGGCAGCGCCCTTATTGCTGTGTTCTCACCACAGGCCTTGTCTAGGGATGCTTCCTGGGAGAATGGAGATACACTTTTCTTTCTTTGCTACCTTCCAGGATCCAGTAAGGCTTTCTGTCTGCCGCCATCTTCCCCATGAATTTTTGGTCCTGGTTAAAATACTATTGAATTAGTGTTACAAAGCCACAAGCCACACTATCCTAGCTTTTTCTTTCTTGTCTAAGTACCTATTGAGGAGGTATTATTGTTGTTCTCTATAGATATATGTATGTATCATTTTCCATAAATATTTTTAACCTCATTTTATGTGTATGTGTGCTTTGCCTGCACATGTCTGTATACCACATAGTATGCCTAGTGCCCAAGGAGGCCAGAAAAGCGGGGTCAGTACCCTGGAACAGGAGTTATGGAAAGTTATAAGCCATGATGCAGAGGTTGGGAGTCAAAGCCAGGTCCCCTGGAAGAGCAGTGGGTGCTCATCACTGCTGCTCGTCACTGCAGTCTCATCACTTTCCATAGCCGTGATCAAATTCTTGTGTCACTTAAATCCCCTCTCAGCCCAGACACACAGTGAGTCCTATCAATTAATCTGTCAGCATTATCCTTCCTAGGGCCTTTTTGGGGAACACTGTTGTTACCCTGAGACTGACTTTGTCGCATACTGGGGCATCTCCTCCCTTCCATCTCTTTTTGCTTTGGCTCCCCGGGCCGGGCCTGCTCTTTCCCAGTCCTCTTCTTCCCAGGGTTTTCTTGGAACAAATCCTTGCCGTAACCTGGAGACAGGTGAGGGGCACATTTTCAAAGAGTATTCACTTATTCATATTTTATGTGTATGTTTGTGATTTATCTGTATCTATCTGTGCACTGTGTGAATGCAGTGCCCACAGTAGTCAGAAGAGGGCATCAGATCCCCTGGAACTGAGTTATAAACAACTGTGAGTCCTGTGTGGGCACAGACCCAGGGTCCTTTGCAAGATCAGCAAGTGCTCTTAACTACTGACCCTTCTCTCCAGCCACCAAGGAGGGCCATTTTAAAAGTCTAGCTTACCCAAGATGCTTTTCAGAGTCTGGCCAGCTGTGGTTCGTGGATGGGATAAAGGCTGGTGCCTGTTCTGGAGAGCTAGGCAAGCTCTTTGCATTTATATCAGGTAACAAAGCAAACAAAGAAAGCCCAGCTGTGACCTACAGAGTTAAAAGATATTTCACCCTTCATAGGAAAGAGAAAACACGCCTTTGGCTACATCTCACCTGTAGCCTTGCTCTTCTAAAAGGATGTTTTCCTAAAGACGGCTGGGATCAAATCCATCCTGACCTTGCCTTAGTGATAAACCTTAGGCTAATTTGAAGTCTTTTCACATTGTTATGTAGGGTGTTTGGGGTGAACATTCACTCTGCGTAGGTTTCCTTAGTAGTCCTTTGTCTTTGATGATCAGAGAGCATATTCTAGCGACCTCAGTCCTTGTGAAGCATGTGTGGTGAGCTGCATATGAACAGTTTTGTTAGATGCTTTCTACTGTCTTTAAACCCTGTCGAGTTCAAAGTCTGCATACAGCATACATCCAATTTGTTGATTACATTGTTTCAGACCTTCTGTATTCCTTCTGGCTTTTCCTGTTCTGCTTGTTAAGCCATTTGCTGAAAGAAATGTATTGTTAGAACTCTCTCTGTATGTAGACTTAACTTGTTTCCTTATAGTTATGACAACTTTGTACTGTATATCTTGAATGTGTGTAATTGGATCACGTAGACTTATTTTGCTTTTTGAGTGAGCTCTCATATAATTATTTTTTGGAATTATTTATTTTATGTATATGAGTACACTGTAGCTGTCCTCACACACACCAGAAGAGGGCATTAGATCCCATTATAGATGGTTACGAGCTACCATGTGGTTGCTGGGACTTGGACTCAGGACCTCTGGAAGAGGTCAGTGCTCTTAACCACTGAGCCATCGCTCCAGCCCAAACTCTGGTATCATTTTACAATGCTCTTTTTATCTCTGTTACTGGGCATGACCTTAGTCTCCATTTAGTTTAATTCTTTCTCTGTCCTTTACTGTGTCATTTTTTTCTTTAATATATAATTCTTACAAGCAGCATATAGTTGAATTTTATATAAGTTATTCCATCTGACAGTTTTAGGGGTTTATTAATTTTTAATTTTTTTTTTACTTTTTAATTGGCATATTTAGCCCATTTATATTTAATGCAATTGTAAGTATACTTGGCTTTAAAATCTACCACTTTAGAGCTGGAGAAATGGCATATCTATCTATCTATATATATATATATATATATATATACACATATATACATATATATATTGAGCTTACTCATACATACCAAATAAACCTTTAAAATATGCTATTTTATTATTTCCTGTTTACCTTATGTGGTTCATTTCCCATCTTTTGTTTTCTCTTTTCTTATCATTTTATATTAATTAATTTGTTTTATAATTTATTCTATTTTCCCCCTTCTAGTAACTCAACACTACTCATTTTTATGGTTTTGGTTTGACTTGGTTTGGTTTGAGCTGGGCTTCTCTGTGTAGTTCTAATTGTCCTGGAGCTCACTATGTAAACCAAGCTGGCATCAAACTTACAAAAAGTCTCCTGCTTCTGCCTTCCATGTGCTGGTATTAAAGGTGTGTACCACCACACCAGGAAAAATTTTGTAATTTTTTTCCAATGGTTTAAGTCTACAGATTACAACATAGTAATTAATTGTTAATAACTCCTCTAGGATACATTAGGGAGCAGATTAAAAACACAGGAACCTTGACCAGGGCACCATATATTTCAATAAATATATTTATTTTTATTTTTTATTTTTGTAGTACCAGGGATTGAACCCAGGGCCTGACACACAGTAAGTCACTGTTGTACCTCTGGGCTGTACCGATAGGTCCAGTAAGCTTATTTTAATAGGAGCAGTTATAGAACCCTTGGCGGAGATGTCTCTCTATATCAATAGAATGTTATTATTATGTGTGCTACATGGCTTTGGTTCCATAGCAGGCTGCTACTCAGCATTTATAAACGAGGACATTGAACGAGAGCTCTCAAAATGCATTCTCTTTACCTCCTTAATATTCGGTTCTGCTTTGTTGCTTTATAAAAATTCAAACAAGAAAATATTCCCCAAGTGGGATTGATGAAGATCGTACGAGGGAAGGTGATTACCTGATCTGCTGCTGCAAGCCGCATGGTTTCCCTTTCTTCCTTTTCTTTTTCAG
Seq C2 exon
ATGGGCAAAGCATGTGGCCGAAAAAAACGGATACCTGGGACACGTCATCCGCAAAGGTCTCAACGCCTACCTGGAGGGCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029189-Sel1l3:NM_172710:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(35.9=32.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: