GgaINT0072911 @ galGal4
Intron Retention
Gene
ENSGALG00000014370 | SEL1L3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:HGNC Symbol;Acc:HGNC:29108]
Coordinates
chr4:73014318-73015650:+
Coord C1 exon
chr4:73014318-73014445
Coord A exon
chr4:73014446-73015566
Coord C2 exon
chr4:73015567-73015650
Length
1121 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGG
5' ss Score
6.17
3' ss Seq
TTCTTTGTTCTTTTCTACAGCTG
3' ss Score
11.54
Exon sequences
Seq C1 exon
ACAGTAGCTGCACAATATTTCTATAAAGCTGCTCAAGGAGGACATATAGAAGGGACTTTACGATGTTCTCTGTACTACATCACGGGAAATATGGAAGAATTCCCCAGAGATCCAGAAAAAGCTGTAAT
Seq A exon
GTAAGGAATGAAATCATTTGCTAAAAGGGAATTTATTTCTATTTAGATTATTTTGATTATTGGTGATTTTTAAGTCCACGGTCAAAACGTCTTTTATTTCATGGTGTTTACCTCCCTGAGAAACAAATCTGTAGTAAAGTTTGATCCCCATTAATATGAGTCTTATTTAAATTACCAGTAGATTTTGAGAGACGCTGAGTACTTTTGGTGGACTTTCAGATGCACCCAAGTACACTGGCTCTTTGAGTTGATCCAAAGGCAGGAAAAGAAAACGCAGGTAGTGTGCAACACAGCAGTGCACATTAGCATGTTAAGAGATGTTAGAGTTGTTGTACAAAGAGGCTGATGAGAAATTATAGTGCTTATCACTAAGTTTGGGCATTTGGTATTTTCTTTTTCAAAAAAAAAAAAAAGAAAAAAAATTGCTAAGAAAAACCATAGAATGTCTCTGATATGCCTATGGAGATGAACTGGAAAATATGTTCTTATTCATAGAATCATGGATTCACCAAGTTTGGAAAAGACCTCCAAGATTATCTAGTCCAACAGTCTACCTTTCACCAATATTTCCCCACTAAACCATGTCCCTTAATACACCATCTAAACTTTTCTTGAACACTTCCAGGAATAGTGACTCAACTACCTCCTAGGCGGCCTGTTCCAGCACACGGCCACTCTTTTGGAGAAGAAATTTTTCCTAATACTCAATTTGAACCTCCCCTGGTACAACTTGAGGCCATTCCCTCGAGTCCTATGGTTAGTTATGCATGAGAAGAGGCTGACCATCACCTCACCACAGCCTCCTTTCACGTAGTTGTAGAGAGCTGTAAGGTCTCCCCTGAGCCTCCTCTTCTCCAGACTAAACAACCCCAGTTCCCTCAGCTGCTCCTCACAAGACTTGTGCTCCAGATCCCTTACCAGTTTCATTGCCTTTTTCTGGACACACCCCAGGTCCCATTCAGTCAACACCTACAAGACCGTTGCAGCAATTACTGCAAAATCTCATAGTTTATGTTATGAAGGAAGTCAGGTGATCCTGTATCCTTTTGTGTTCTTCATGTCAAAGTGAGTTGGGATTACTGGAGCACAGCTGTTAATGTTTTCTTTGTTCTTTTCTACAG
Seq C2 exon
CTGGGCAAAGCATGTTGCGGAGAAGAATGGCTATTTAGGTCATGTCATTAGAAAAGCACTCAATGCTTATCTGGAACTTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014370:ENSGALT00000023214:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(36.8=32.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCACAATATTTCTATAAAGCTGC
R:
CATGAAAGTTCCAGATAAGCATTGA
Band lengths:
206-1327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]