RnoINT0132682 @ rn6
Intron Retention
Gene
ENSRNOG00000004932 | Sel1l3
Description
SEL1L family member 3 [Source:RGD Symbol;Acc:1562860]
Coordinates
chr14:60200426-60204485:+
Coord C1 exon
chr14:60200426-60200553
Coord A exon
chr14:60200554-60204401
Coord C2 exon
chr14:60204402-60204485
Length
3848 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGA
5' ss Score
3.68
3' ss Seq
CTCTTTCCTTTCTTTTTCAGATG
3' ss Score
13.89
Exon sequences
Seq C1 exon
ACACTAGCTGGCGAATACTTCCATAAAGCTGCACAAGGTGGGCACATCGAAGGGACATTGTGGTGTTCTCTTTACTATATCACCGGAAACCTGGAGACCTTCCCTAGAGATCCGGAGAAAGCTGTTGT
Seq A exon
GTAAGATTCTGTCAGATGTTGCCTTCCATTGAGAAGCCGTGTCCTCTGTTCACCTTGCCTAATAAAAGGGATCTCTTTCTTTNNCTCTTTGCCCTCCCTCCCTCTCTCCCTCCTTCCATCCCTCCCTTCCTCCCTCCACCCTCCCACCCTCTCTCATTTCATTCCTCTTCCCACTTCCTTCCCCTTTCTGCTGATTTCTTTGTCTCTTCGCACCTTTTAAAAGTCAGTTTTTACCTTTATCAGTTACACGTGAGTGTAGATTTAAAAGAAATAAAACCAGCTAGGGCTGGAGAGAGGGTTCAGAGGTTAAGAGCACTTACAGCCCTTGCAGAAGACCCGAGTCCTTTACACACACACAGCAGCTCATAACCATAGGCCCTCTTTTGACATCCTCAGCTACCAGGCACACATGCGTTACCCAGACACACATGTGGGTGAAACCAATAAAATTAAAACCTACAATTCGTGTATAAAAGAAAACCAAATAGTTGATAGGAGAAGTATTTTAAATTTTTAATTTAAAAAATTCAGCAAGGCAAAACAAGCAACCCCTGCCTCCACCCTTCACCCCATTCCAGTTCCTGGTCCATAGAATAAGACCCTGACTATACTTATCCCTTCCTGGCCCCTACCTCTAGGCAGCGCGTCCTTACCACTGTTTTTAGTATTTTCCCTGCAGGCCTTGTGTAGGGATGCTTCCTGGGAAACAGAGACACGGTTTTCTCTGCTACCTTCCAGGATCCTTCCTGGTTTTGGTCCTGGTTAAAATAGTATCAGGGTTGAATTAATATTGCAAAGCCATGAGTCACACTATCCTAGCTTTTTCTTTCTTGTCTAAGTATCTTTCGAGGATGTATTATTGTTGTTTCCTATATATGTCTGTGTGCATCATTTTCTATATCATTTAAAAAAATAAACCTCTATTTATTTTTAGCCTTACCTTATTTTATTATTTTATGTGTCTGGGTGTTCTCCTCCACGTATATGTCTGTATATGATGTAGTATGCCTAGTGGCCAAGGAGACCAGGATGGGGGTTCGGCACCCTGGAACTGGAGTTATGGAAAGTCGTAAGCATGATGTGGAGGTTAGAAATGAAACCCAGGTCCCTGGAAGAGCAGTGGGTGCTCTTCACCGCTGAGCCGTCTTTCCATCATTTTCCAGATTCTTGATCAAATTCGTGTGTCCCTTAAATCCCGCCTTGGTTTGCCCAGATACACAGCGGTTTCTAGCAATTGATCTCTCAGCATTATCTTCCCGGAGTCTTTCTGGGGAACAGTGTGTGACCCTGCACTCCCATCTTCCCATCTGACAGTGCTCCCAGGCCGACCCGCCCTTTCCCAGTCCTCCTCTTGCCAGGGTTTTGCTGGCACAAATCCTGCAATAACTTCCCGAAGATAGGTGAGGAGGCTCATTTTCAAGCAGGACTCGCTCCTTTGTATTTTACGTGCATGTACACCTGTGTACTGTGTGAATGCAGTGCCCACAGTGGTCAAAAGAGGGCGTCAGATCCCCTGGAACTCGAGTTATAAACAATTGTGAGCCCTGTGTGGGCACAGACTCAGGGTCCTTCGCAAAATCAAAAAGTGCTCTTGACTACTGACCCGCCTCTCCAGCCACTAAGGAGGGTGACCCTAGCTTACCCAAAATGCCTTTTAAAGTCTGGCCCGCTGTGGCTCATGGATGGGATATGGGCTGCTGCCTGCTGGGCTGGGCTCTGCAAGCTCCTTGCATTTGTAACACGATACAAAGAAAACAAAGAAAGCCCGCCTGTGGCCTACAAAGTTAAGATATTTCACCCTTTGTAGGAAAAAGGAAACACCCCTCTGGCTACGTCTCACCTGTAGCCTGGCTCTCTAAAAGGATGTTTTCCTAAAGAGGTCTGGGATCAAATCCATCTTGACCTTGCCTTAGTGATAAAACTTAGGCTAATTTGAAGCCTTTTCTCATTGTTATGTAGGGTATCTGGGGTGAACATTGGCGCGGTGTAGATTTTCTTAGTACTCTTTTGTCTTTGATGATCAGACAGCATATTCTAGTGACCTCCGTCCTTGTGAAGCATTCTTGGTGAGCAGTGTATGAACAGTTCTGTTAGAAGCTTTCTTCTGTCTTTAAAACTCTGTTCAAAAGTCTGCACACAAAGTCTACACCAAAGTTGTTGATTACATTGTGCAGAGCTTCTGTATTCCTTCTGCTCTTCCTGCCCTGCTTGTTAAGCCATTTGCTGAAAGAAATGTGTTAGAATTCTCTCTGTATATAGACTTAACTTGTTTCTTTATATTTATAGACAATTTTATACTGTATATCTTGAATTTATATAATTGGATCACATAGATTTGTTTTGCTTTTTGAGTGAACTCTCATATAATTTTTTTTAATTCTTTATTTTATTTATGTACATGGGTACACTGTAACTGTCCTCAGACACACCAGAATGGGGCATCAGATCCCATTACACATTGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCGGTGCTCTTAACCTCTGAGCCACCTCTCCAGCCAGAATTCTTGTATAATTTTACAATGTTCTTTTTATCTTTGTTAGTGGGCATGGCCTTAGTCTTCATTTATTTTAATTTTTTCTCAGTCCTTTAATGTATCACTTTTTTTCTTTAATGTATAATTTTTTATAAGCAGCATAGAGTTGAGTTTTATATGAATGATTCCATCTGACAGCTTTAGAGTTTATTAATTTGGAGTAAACATTTTTTAATTTTTTACTTTTTAATTGGCATATTTAGCCCATTTACTTTTAATGCAGTTTGTAAATATACTTGGCTCTAAAATCTAAGAGCACTTATTGTTCTTGCCTACTACACTCCTGGGGACTCACAGGCATCTATAACTTTTAGAGAATCCAGTGCCTTCTCTTGACTTCCTTCAGAGAGTACCAGGCATGCACGTGATACACACACACACAAATACTCATACATACCAAATAAAATAAATAAACCTTTAAAATATACCATATTATTATTTTCTGTTTACCTTACCTGATTCCTTTTTCATCTTTTGTTTTGTTTTTCTTATCCTTCTTTTGTGTTAATTAATTGTTTTATAGTTTATTCTATTTTTCCCTTCTACTAACTCAAAGCTATTCATTTTTACACTTTTGATTTGGTTTGGCTTGGTTTGAGCTCGGCTTCTCTGTGTAGTTCTGGCTGTCCTGAAGCTCACTATGTAGACCAAACTGGCATCAAAACTCACAAAAATTCTCCTGCTACCTCCCAAGTGCTGGTACCACCACACCTGGCAAGACTTCATACTTTTTTTTTAGTGGTTTAAGTCTACAGATTACAACGTAGTAATTAATTGTTAATAACCCCTCTAGGGTACATTAGGGAGCAGATTAAAGAACACAGGAGCCTTGACCACTGTACCATATGTCAGTATTTTTTTTTTTTTTTTTTTTTGTGGTACCAGGGATTGAACCCAAGGCCTGACACGTATTAAGCCACTGCTGTACCTCTGGGCTGTACTGACGGGTCCAGTAATCTTAGTTTACTAGGAGAATTGTCGGAGATGTCTCTCTGTCAGTAGAATGCTCTAGCATGTGTGGTACATGTCTTTGTTTCCACAGCCAAGTGCTACTCAGCATTTATAAATGAGGACGTTGAACGAGAGCTCTCAAGATGTATTCTCTTTACCTTCTTAATATTCCGTTCTGCTTTGCTGCTTTATAAAAATTCAAACAAGAAAATATTCCCCAAGTGGGATTTATGACGATCGTATGAGGGAAGGTGATTGTTTAATCTGCTGCAGCCTGCAAGGTTCCCCTCTCTTTCCTTTCTTTTTCAG
Seq C2 exon
ATGGGCAAAACATGTGGCTGAGAAAAACGGATACTTGGGACATGTCATTCGCAAAGGCCTCAATGCCTACCTGGAGGGTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004932:ENSRNOT00000006610:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(35.9=32.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]