HsaINT0147105 @ hg19
Intron Retention
Gene
ENSG00000091490 | SEL1L3
Description
sel-1 suppressor of lin-12-like 3 (C. elegans) [Source:HGNC Symbol;Acc:29108]
Coordinates
chr4:25777899-25780825:-
Coord C1 exon
chr4:25780698-25780825
Coord A exon
chr4:25777983-25780697
Coord C2 exon
chr4:25777899-25777982
Length
2715 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGA
5' ss Score
3.68
3' ss Seq
TCTTCCCTTTTTTTTTTCAGATG
3' ss Score
12.45
Exon sequences
Seq C1 exon
ACTTTAGCTGGTGAATATTTCCATAAGGCTGCGCAAGGTGGACACATGGAAGGGACCTTGTGGTGTTCTCTCTACTATATCACAGGCAACCTGGAGACATTCCCTAGAGATCCTGAGAAAGCTGTTGT
Seq A exon
GTAAGACTCTGTCAAACGTTGCATTTGAAGGGAAAGCCATATCCTATATTCTCTGTGCCTGAGCATTTTTTAAGTTGAGTTCTTTATTTTTACCAGTTGTACATGCATGTAGTTTTAAAAGTCATGTAATTTGACAAGACAAAATTAAAACTTTTAATTAAAAATTTAAAAATAATTTGACAAAGGCTAAACAAGAAATCCTTGCCTACCTCACTTCATCCCACCCCTAGACTCTATTTTCTGCTCCCTAGAATGAATCACTTTCAATCTTTTTTGAAAGATTTATTTTATTTTATTTATTTTTTATTTGTCTCTATTTCTAAATAACATGCTTATACCACTATTTCTTGGTATTTTCATCCGAGGCATTGTCTAATGATGTCCCACTGCGAAGGATAAAGATGTAGTTTTCTTTGACTCTGCCACCTCCCACTACTCAGCTCACTCATACTTCCTGCCATCTTTCATCTTCCCAATAAGTATATCATTTTGGTTACATTAGTATCAGGGTTTACATTATTATGACCATGTAAATGCTATTTCTAACTGAACCATGTAGTATACTCTGATTACTTTTCCTTTCTTGCACAACTTTTTCTTTTCTATGGATTGCTACTTATTTTTTATTGTTTATTTGCTAAGCTTTCTGTATACTTATCATTTTCTATGTATTTGATCTCCAAATTCTCCTCCAGGTGCCTGAATTTCCTCTTGGTATGTCCAGACCTATCTAAATATTATATTAATTTAACCTTCTTGGTGACATCCATCCTGGAGTCTTTGTTCAGGACAATGCTGTCATGCTGAGATTAACTGTCATCATTATGGGTATTTACTTTCCCTCCATCTGTGTCTTTTTTGGTTCTCTTCTTTGTCAGACCCCTTTCTTTCTCTTTCTTGGTCTGCACTTAAATTTTGGTGGAGCACATCCAATAGTAGGTTCCTGAGGTATGGTGAATGGGAGGCACATTTTTGAGGTCTTGCAGATCTGAAAATGTTTTACAGGAGTTGTCAAACCATGACCCATAGATGAAATGTAGCTTGGTACCTGTTTTGTATGGCTCCAAGAGCTAAGAATGCTTTTTACATTCTTGAGGAGTTATAAAACAAATAAAGAAGAATATGCAACAGAGACTATATGTGGCCCACAAAGCTTAAGATATTTACTATCCTGCTCTTTACAGAAAAAGTTTGTCGACCTCTGTTTTAGGCCACCCTCACACTGATACCCTGGCTCTCCAAAAGATTGTTCTTCATAACACATTTGGGTTCAAATTCAACCTGACCTGACCTTGGTGATAAACTTGACTTAGACTGACTTGAAGTTTTTTATCATTGTTATTTAGTATATTTGACATGAATATTCATGTTTTGTGGATTTTCTGTTATCCTCTTGTTAATGATTTCTAGCTTAATTTCACTGTGATCAGAGAATATATTCTGAATGATTCCAATCCTTTGAAATTTGTCAAAGTGTGCTTTATGATTGGTATATGGTCAATTTTGGTATATGTTTTATGGCTTTTTGAAAAGAGTGCACTTTCTGAACTTGCTGGATCAACATCTACATATATATCAGTTACATCAAGTTTGTTAATTACATTATTCAGAGCCTCCCCATCCTTTCTGATGTTTCTTTTTCTGCTTGTTAGTTCAGTTACTGAAAGAAGTATATTAAAATCTCCAACTATATTTGTGGACTTACCTACCTCTCTTTTTAGTTCTGTCAATTTTGCATTATATATCTTGAATCTATGCTATTAGATCACATAGATTTAGAATTGTTTTGTCTTTGTAGTTGATCCCTTTATCATTTTACAATGTCTTCTTTATCTCTGTTGATGGTTCTTGCCTTAAAGTCTATTTTTTCTGATGATCATATAGTTATACCTGATTTTAATGTTAGAGTTTGTATGATTTATCTTTTTCCATTTTTTTGCTTTCAACTTTTCTTCATTCTTAAATGTCAATGCATGGCTCTTGTAAGCAGCATGTAATTGGGTATTTGTATTTTTTAATTTTTAAAATTTTGTATTTTTATTTTTTGTATTTTTAAATTTTCATCTTTAATTGGTGTATTTTGTCCATTTACATTTAATGTAATTATGGATATGTTTGGTTTTAAATATACCATTTTCCTGTTTATTTTCTATTTGTCACATCTGTGGGGGGGTTTTTGTGCCTTTTTTTAATCTCTTTTCTTACCCTTCCTTTGTATTAATCAAGTATTTAAAAAAATTATTCTACTTCCCCTTCTGTTAGCTTTTTAGTTATGCATTCTTAAACTATTATTTTAGTAGTTATAAATCTAAAGATTATAACAGACTAGCTCATTACTAATAAACCCCTAATAAATTAGAGAACAAAGCAAAATAGGGAAAGCTAATAATAAGTCAGTAAACATGACTTAATAGAGTACTAGAACTCTTGGTAGAGATTATATTTTTTCATATTGGTGGATATATTTCATTATGTATCTTACATGTCTTTGTTTCCATAAAAGACAACTCCTAATCATTCATAAGAAAGGGCACTAAATGAAAAGCTCTCAGAATGCATTTTCTTTACCTTAACATTCAGTTCTGGTTTGTTGCTCTATAAAAATTCTAACTAGCAAAATATTCCCCAAGTGGGATTTATTGAGAGCATATGAAGAAAAACATTTTATTAAATTTGCCATGGTTTGCGTATTTTCTCTTCCCTTTTTTTTTTCAG
Seq C2 exon
ATGGGCAAAACATGTAGCTGAGAAAAATGGCTACTTGGGCCATGTCATCCGCAAAGGCCTCAATGCCTACCTGGAAGGTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091490-SEL1L3:NM_015187:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082387=Sel1=PD(35.9=32.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)