MmuINT0140956 @ mm9
Intron Retention
Gene
ENSMUSG00000026581 | Sell
Description
selectin, lymphocyte [Source:MGI Symbol;Acc:MGI:98279]
Coordinates
chr1:165996742-165999189:+
Coord C1 exon
chr1:165996742-165996927
Coord A exon
chr1:165996928-165999003
Coord C2 exon
chr1:165999004-165999189
Length
2076 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGCTTCTCTCTCCATGAAAGTGG
3' ss Score
3.76
Exon sequences
Seq C1 exon
TGGTCCAGTGTGAGCCTTTGGAGGCCCCTGAGTTGGGTACCATGGACTGCATCCACCCCTTGGGAAACTTCAGCTTCCAGTCCAAGTGTGCTTTCAACTGTTCTGAGGGAAGAGAGCTACTTGGGACTGCAGAAACACAGTGTGGAGCATCTGGAAACTGGTCATCTCCAGAGCCAATCTGCCAAG
Seq A exon
GTGAGTGACTTTAGAGTGGATCTTCGTTGTTGGGACAAAATAATACCAGTTGGGACAAATCAATATTAGCAGTTCTAAGAAATGGGAAGTTCCAAACAGAAAGCTAAACTTTCACAATAATATCTTCCTGTAAAGATTTCCCAAGTCAGCATGAAGTTTCAATTTACTTCACAAGTGGTTTGAAATATCACAAGGAGAAATGTGTTGGGATTTGTCAAAGGTGAGCAGGTTACAGTAAAAAATGGGGTATTGTAGACCCTTACTGTCAAGGATGTCACAGTCCTCTGAGCTTGCAGGATTAAGAACTATGAGGTCGAATAGAAACAATTCTATTTCTCCCTAGGAGAGTGAGGTATTGGGAAGGTACTCCTGTTCTTCTATAGACAGATGTGACAAGGAACAGTAAAAGAACGAACATCTGATACACAGAATATGTCAGAGTTATTTAATAACAAATCCTATACACTTATTTTGGTTGGGTATTTCTGGAGAATATGGAAGCAAATCATAGATTCTGTACTTATGGAATATATATTTAATAGAAACTATTTATGTTCAGGGATCAAGTTTGAAGGAAAATGAGATGAACAGGAATAATCCTGTGGTGAGATCCCCTAATAAAATACAGGTCCTTTATTTGCAATGAATGGCCACTTGGCATCTTACTGCCAGCACTGGAGGCAATTATCCTAGAAACAGCACAGAGGACCACTGCTAGGATGGCCAAGAAAGAGAGGGTGGAGTCATCAGAGTCCTAGGAAGTCACTCAGAGATGCGGTGGGAGAACCGGAAATGAGAGAATACACATGTGCAAAGAGAAAGGCTCCAGCTCAGCCAACTACTATGGAAAGGCGCATCAAATCTTCAGAATGAGACTAAGTTTCAAAATGCGTTTTGATGTGTCTGCTGCACACAATGGAAAATTGGAAGAAGAAGACAAGTAATGGCTTTAAGGAATAAAGAACTGAAACAAAAATTAATTTCAGTATTAACCAACTGGACTAGATCTGACCAATTCACTTATCTCTGAAACTGTGACTCTTCCCCAGAATGTTACCTCCACCACACCGTTGGACTGCCCTTTAGTTTACTCCCCTTTAAACATCGTGCTTGCTTTCTTGATTTCCATCATATCCTTTTTCTAACTGTCTATTTTGTTTGTTTTGGTTTGGGTTTTGGTCTTTTGTTTTCAAGACAGCATTTCTCTATGTGGCCTTGGCAGTCCTAGAACTTCCTCTATAGACCAGGCTGGCATCAAACTCAGAGATTCGAATGGGGTAGGAGGCATATTCCACCACCAGCTGGCTTCTGATTGTTTGGTTGACTATAGTGACTTCTTCTGGGTTCTTTCATTTGTACTTATCCAAGCTCATAAACTCTTAGTCTCAGTATCTGTCTTTTCTATTATTACGACTTGGTTTGTTTCTTTCTTCAAATTTTCTGAATTTTATGGATGTATATATACCTATGTGATCTTTGGATTAACAAATCTGTTTTTAGCCATGACCTCCAAATATGCTAAGAATGTTGTTTGGATATCTACGACTCAAGTGTCTCCAGTCAGTTTTTTTTTCTTTTTTGTGGCTGTAATTACATTCCATGGAAATGACATTTAATGTCATTTGTTTAATGTCAATCTGTGAAAAGAAATGGTGTGAAACTCTGCCACCCTACTCCAATACTTGTGTAAGATAACACTTGATAAATCAATTTTCAAAATTTTATTTCTTTTATGGGGCTGAAGAGATGGATTAGCTTAAGTGCACTGGCTGCTCGTACAGCAGACCTGAGTTCTATTCCCAGTCATCACATGGTGGCTAACAGACATCTCTGACTCCACCCCAGATGATACAATGCCATCTTTTGGCCTCCTGGGGCTCCAGGCACAGAAATAGTACACAATATACTTGCATACAAAACACCTATACATGTACAATTCAATAAAATAATTTTTATTAATTAAAAAATAGGCACTATCACACTTGGATATAATGCACAATGATTATATTCATCCCCAGCCCCATTCCAATCAAATCCTCATAACTCTTCTCAACCCTGCTTCTCTCTCCATGAAAG
Seq C2 exon
TGGTCCAGTGTGAGCCTTTGGAGGCCCCTGAGTTGGGTACCATGGACTGCATCCACCCCTTGGGAAACTTCAGCTTCCAGTCCAAGTGTGCTTTCAACTGTTCTGAGGGAAGAGAGCTACTTGGGACTGCAGAAACACAGTGTGGAGCATCTGGAAACTGGTCATCTCCAGAGCCAATCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026581-Sell:NM_011346:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(93.8=95.2)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: