MmuINT0145696 @ mm9
Intron Retention
Gene
ENSMUSG00000011486 | Slc25a41
Description
solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
Coordinates
chr17:57179241-57181077:-
Coord C1 exon
chr17:57180997-57181077
Coord A exon
chr17:57179397-57180996
Coord C2 exon
chr17:57179241-57179396
Length
1600 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
AGCAGCGGCTGTTCTTGCAGGTT
3' ss Score
6.46
Exon sequences
Seq C1 exon
AGCTGGGAGCCAGATAGACGCCCCAGAGGACGCTGAGACTGGGACCTTAATCCTTCAGCAACTATGGGAGTCCATCTCGAG
Seq A exon
GTAACTCAGCATCCTCGTTTGAAGGTTCAAACCTTGCTTAAGAGGGTCAAGGCTCAGCCGGGCGTGGTGGTGCACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGTCAGCCTGGTCTACAGAATGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGGGAAAAAAAAAAAAAAAAAAAAGAAGGGTCAAGGCCTTATTTAGGAAAGCTCCACCCTGCCCTACCCCCACCCCTCTCCAGCCTACCCTACCACCATCTGAAGCATGGAACCCAAGGTGCACACACATGTATGAGTATGTTTGGACATGTGGGTGAGAACAACCCTGAGCATCCTTCATCATAGCAGGTAAGTCTGGGGAGTGAGATGGCACAGGCTGGACCAAAGGGAAAAAGCTTTGAGGCCCATATGGTACGGAGCACCTCCCTCCAGACAGAGTAGAACAACCTACACTGAGACCATGTGTGAGACCACGTGGTAGTTCACACCTGTTATCCCAGCACTCAGGAAGCTGCAGGCAGGACATCAAGAAAGGTCAAGGTCATTCTTGACTGTTTTAGTGAGTTAGAGACCAGTATGGGCTACTTGAGACCCTGTCTTAAAAGGGGAAAGGGGAAGAAGAGAAGGAGGCTGGGGCTGGCTAAGGAGACGAAGTGCCTGACACTCCAAAGCATAAGGCTGGACTTCAGAACCCTAGAACCTGTGTAAATGCTGGGCAAGCCTGACAGCCATCTGTAACCCCAACAGCACAGAAGTGAGACAGAGATGGGGGAGCAAGCTGGCTGGCTAGACCAGATCAACTGCTGAGCCTCTGGGCTCAAGTGAGGAACTCTGCCCCCACATATAAGGTAGAGAGTGGTCCAGGATGACCCTGCACATCAATTTCTGGCCTAAACACACTCACACACAAGAGACACATGCCACTTCAAACACGCACGTACTCTCTCTCACATAGTCCCACTCACATGCATGCACTCTCTCTGACACACACACAGAGTCACACATATCACTACACACACACTCACATACACACAGTAACACATACATGCATACACTCTCTCACGCTCACACGCACAAAGATAGGAAAACAGACTGGAGAGGTTAAGAGCTCTCACAGAGGACAAGAACTCAGTTCCCAGCAACCACATGCTGGTCCACAACCAGATGCATTGAATCCAGTGTGTTTTTCTGTTCCTCTTGGATACCTTCATACACAAACAAAAAGTAAATCATTAAGAAAGTCAGAAATCAGCTAGTGGCGTATGCCTTTAATCCCAACACTTAGGAGACAGAGACAGAGATCTCTGTGAATTAGAAGCCAACCTGATCTACACAGTGTGTCCCAGGACAGCCAGAGCTACAAAGTGAGACCCTGCCACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACCACCTAATCACCCCCTCCAAAGAATTGTCCACATTGAGGCAGCAAACAGAAACAGCTCCTTTAGGGCTCCGGAGGGAGTGAGCTCTTTTAGGACTGAGTGTGGCCAAGCAGCGGCTGTTCTTGCAG
Seq C2 exon
GTTCTGGACACGGGAGAGCAGCTGATGGTCCCTGTGGATGTCTTGGAAGAGGAAAACAAGGGGACCCTGTGGAAGTTTCTGCTCTCTGGAGCCATGGCTGGGGCAGTGTCTCGCACAGGGACAGCACCTCTGGACAGAGCCAGGGTGTACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011486-Slc25a41:NM_175333:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(35.1=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGCCAGATAGACGCC
R:
ATGTACACCCTGGCTCTGTCC
Band lengths:
230-1830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: