MmuINT0145700 @ mm10
Intron Retention
Gene
ENSMUSG00000011486 | Slc25a41
Description
solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
Coordinates
chr17:57033720-57034954:-
Coord C1 exon
chr17:57034787-57034954
Coord A exon
chr17:57033868-57034786
Coord C2 exon
chr17:57033720-57033867
Length
919 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
ATTCTTGCCTCCTTTCGCAGCTA
3' ss Score
8.64
Exon sequences
Seq C1 exon
GTACTCAAGACTCGGCTGACCCTTCGCTTCACTGGCCAGTATAAAGGGCTTCTGGACTGTGCCAGGCAGATCTTGGAACGGGATGGTACCCGAGCCCTATACCGAGGCTACCTGCCCAACATGTTGGGCATCATCCCCTATGCTTGCACCGACCTAGCTGTTTATGAG
Seq A exon
GTGTGTGTCTCCAGAGGGGAGAACATGGCTTTGGTGGTCAGCCTGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTCTAGACCAGACTGGCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGAGCCACCATGCCCGGCTCTCTCATTTTATATGTATGAGCACAATGTCGCTGCCTTCAGACACACCAGAAAAAGGCATCAGATCCTATTACAGATGGTTTTGAGTCACCGTGTGGTCGATGGGAACTGAACTCAGGACCTCTGGAAGCGCAGTCAGTGTTCCTTCTCTTAAATCTTGGTTTTTTTAGACTAAGACAGCATTTGGATGCTGGGAACTGAACTTGGGTCTTCTGCAAGGGACAAATGCTTTTGACCTGGGAGCCATCTCTCCAATCCACTGTTTTTGTTTGATCCCGACACCCAGACAGGATTTCTCTGTATAGCCCTGACTGTCCTAAAACCCACTCTATAGACCAGGCTGCCCTCAAACTCAGAGTTCCAAAGCCTGTTGTTTTTTAAGATAGGGTCTCACTATGTAGCCTTGTCTGAACTAGAACTCAGTATGTACATGGAGGCTAGCCTCAAATGTAAAGAGATCCTCCAGCCTCTGCCTCCTACTGCTGAGATTAAAGGTGTGTGCCATCGTGTCCAGCTGGTTTTGATTATGGGATTGGGTTTTAGTATGCAGCCTTGGCTGTCCCTGAACTTGGAGACCCACCAGCCACTGATTCAACACTGGAGGGACTAAGGTGTGCACCACCATGCCTGTCTTGACTCTGAGTCGGTATCAAGAGCATTCTTGCCTCCTTTCGCAG
Seq C2 exon
CTACTCCAGTGCCTGTGGCAGAAGTTGGGCAGGGACATGAAGGACCCCAGTGGCCTCGTCAGCCTGTCATCTGTAACACTGTCCACGACCTGTGGCCAGATGGCCAGTTACCCACTGACTTTGGTGCGCACAAGGATGCAGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011486:ENSMUST00000058661:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(38.3=72.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCAAGACTCGGCTGACCC
R:
CTTGAGCCTGCATCCTTGTGC
Band lengths:
315-1234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types