RnoINT0137047 @ rn6
Intron Retention
Gene
ENSRNOG00000048853 | Slc25a41
Description
solute carrier family 25, member 41 [Source:RGD Symbol;Acc:1588585]
Coordinates
chr9:10010704-10011619:+
Coord C1 exon
chr9:10010704-10010871
Coord A exon
chr9:10010872-10011471
Coord C2 exon
chr9:10011472-10011619
Length
600 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
ACTCTTGCCTCCTTTTGCAGCTA
3' ss Score
10.55
Exon sequences
Seq C1 exon
GTACTCAAGACTCGACTGACCCTTCGCTTCACCGGGCAGTACAAAGGGCTTCTGGACTGTGCCAGGCAGATCTTGGAGCGGGACGGCACCCGAGCCCTCTACCGAGGCTACCTGCCCAACATGTTGGGCATCATACCCTACGCTTGTACTGACCTGGCTGTTTATGAG
Seq A exon
GTGTGTGTCTCCAGAGCAGAGAACAGTGGCTTCAGATCAGCCTGTAGTTTTCCCCCTGTTCCTTCTCTTAAATCTTGTCTTTTAGGTTATTTAAGCCAGCATTTGGGTGCTGGGAACTGAACTTGGGTCTTCTGCAAGTGCAACAAATAAATGCTTTTTACTGGGGAGATATCTCTCCAGCGCACTGTTTTTGTTTAGTACCTCAACCCCCAGACAGGGTTTCTGTGTATAGCCCTGACTGTCCTGAAACTGCTCTATAGACCAGGCTGCTCTCTTACTCAGAGATCCAAGGCCTGTTGTTTTTTAAGACGGTCTTACTATGTATCCTTGTCTGAACTAGAACTCAGTATGTACATGAGGCTAGCCACAAACTTAAAGAGATCTTCCAGCCTCTGTCTCCCAGTGCTGAGATTAAAGGTGTGCGCCATCATGCATTCCCAGATGGTTTTGATTTTGAGACAGGATCTTAGTGTGTAGCTTTGGCTGTCCCTGAACTTAGAGACTCACTAGCAGATTCAATAGTAGAGGGATTAGAGGTGTGTGCCACCATGCCTATCTTGACTCAGTCCTTATCGAGAGCACTCTTGCCTCCTTTTGCAG
Seq C2 exon
CTACTCCGGTGCTTGTGGCAGAAGTCGGGCAGGGACATGAAGGACCCCAGTGGCCTCGTCAGCCTGTCGTCTGTAACACTGTCCACGACCTGTGGTCAGATGGCCAGTTACCCACTGACTTTGGTGCGCACAAGGATGCAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048853:ENSRNOT00000074117:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=FE(59.1=100)
A:
NA
C2:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(38.3=72.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACTCGACTGACCCTTCG
R:
CTTGTGCCTGCATCCTTGTGC
Band lengths:
311-911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]