MmuINT0146286 @ mm10
Intron Retention
Gene
ENSMUSG00000006469 | Slc34a3
Description
solute carrier family 34 (sodium phosphate), member 3 [Source:MGI Symbol;Acc:MGI:2159410]
Coordinates
chr2:25232380-25233054:-
Coord C1 exon
chr2:25232968-25233054
Coord A exon
chr2:25232509-25232967
Coord C2 exon
chr2:25232380-25232508
Length
459 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GTCCTATCTGATGTCCCTAGAGG
3' ss Score
7.74
Exon sequences
Seq C1 exon
GAATCTCCGGTTCCATTCCAGGCTTGGAAGAGGGAGGTACAGATCCCTGGACCTTCTCTCCGCTGAAGAACGCTGACCAACTGAAAG
Seq A exon
GTAGGACCGGGGGTGTGACACAGCATACAAGCAGGCCCCTGGCCTCCCCTTTCCCAGCAAAGCATAGTCTGGGACTTAATAGAACTCACCTCCTAGAAACCCACATTGAAATGCTTGAGGAAACCTCTCCCAGCCAGCCGCTTGTCTTCCTTTTACTCCCTTTCGATGGCTCCAGTTCTGGGACTCCCCTTTCAAGGTCATGGGCCAAGCTATATGACAAAGAAACAAGGGAGAACAGAGAAAGGGACACGGTCTCTGCCCTGGGGAACTAATACAAGGGAAGATGTGGGTCCCTGCCCAATGGGACAGAAGGGAGATCCTGTGCTCTGCCTGAGAGGTGACAGAAAATATGGCCCCTGTTCTCAGGGAACAAAGAGTGTGTGTGTGGTGGTGGTGGGGGGGTGGGTGTTGCTGGGCAGTAGTCAGCTGGTCAAAGATAGTCCTATCTGATGTCCCTAG
Seq C2 exon
AGGTTGGCATGGCCAGCAGGCTTCGCCGGGTGGTCAGCAGCTTTCTCAAGGCATGTGGACTCCTGGGAAGCCTCTACTTTTTCATCTGCTCCCTGGACATCCTCAGCTCTGCTTTCCAGCTACTAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006469:ENSMUST00000006638:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(11.6=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCGGTTCCATTCCAGGC
R:
TGCCTAGTAGCTGGAAAGCAGA
Band lengths:
214-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types