DreINT0150675 @ danRer10
Intron Retention
Gene
ENSDARG00000036864 | slc34a2b
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030709-1]
Coordinates
chr23:1069111-1070020:+
Coord C1 exon
chr23:1069111-1069254
Coord A exon
chr23:1069255-1069891
Coord C2 exon
chr23:1069892-1070020
Length
637 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AGGCTCTCTGTTTCCCGCAGAGT
3' ss Score
9.51
Exon sequences
Seq C1 exon
GAGCGGACGCGGACAAACATGAGCCCCAAACCCCGACGCGCACCCTCAGTCCCTGGCCCGCGCAGCAGTGGGAGCCGGAGCAGGAGGAAGAGGTGGACCCGTGGGAGCTGCCGGAGCTCCTGGACACCGGGGTGAAGTGGTCAG
Seq A exon
GTAAGAAGTAAAGTTTGTTTCATACTTTCTCCTAAATAATATTGTTTCATGCAAGTATTGCAAATTCTAAATTGGGAATCATATTGTAATATTTTGAAGAAGGTCATGAAGCGTTTTACAGTTCAAACTTCATCTTTTAATGGACTTTTGCACTGTTTTAAACCATGGGCTGTAAAAATTGGAGCATAACGTTGCTTTGGCTCGCCCGAAACAAACAACTCAGCGCTCCTAAAAAAAACCCCATAACGTTACCTTTTTAGGACCCCACGAGTGCGCAGACTCTCTTTACCCCAAAATCCCAACAATACCCAGCCCTAAAGCTTTACATTACACAATCAACATAATCTCACACCATAATATAACACATGAACTGTATTTAGAGCATGCTACTAACGTTAACGTTATATTATCAGCCAGTGACCATTAACATTCAGTCAATTAAATAGTGCTTTTGTTGTTTTGAAGTCATACTTTCGCGCGATTTCACACCCAATTTATTCAAAAGTATCTTGATAAACAATAGAGGGCCATGTTAAAAATTATTGAACGTGTGAATATAATACCCATCTTCAGCTCCATCCTCCGGGGTGGGCGAATAGCTGCTGGTGGCCGCTGTAAGGCTCTCTGTTTCCCGCAG
Seq C2 exon
AGTTGGACCGGCGCGGAAAGGTCCTGCGGGTCTGCACCTCTGTCCTGAAGTTGCTGCTGCTGCTCGGCCTGCTCTACATGTTCGTCTGCTCCCTGGACATCCTCAGCTCTGCTTTCCAGCTGGTCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036864:ENSDART00000053527:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(12.1=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACGCGGACAAACATGAG
R:
CTCCGACCAGCTGGAAAGC
Band lengths:
270-907
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]