HsaINT0152512 @ hg38
Intron Retention
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr4:25662705-25664330:+
Coord C1 exon
chr4:25662705-25662842
Coord A exon
chr4:25662843-25664201
Coord C2 exon
chr4:25664202-25664330
Length
1359 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CCCATCCCACCCCCCTGCAGAGA
3' ss Score
9.47
Exon sequences
Seq C1 exon
CAGATAACACTGAGGCACCTGTAACCAAGATTGAACTTCTGCCGTCCTACTCCACGGCTACACTGATAGATGAGCCCACTGAGGTGGATGACCCCTGGAACCTACCCACTCTTCAGGACTCGGGGATCAAGTGGTCAG
Seq A exon
GTAAAAGTGAGGCCAGCTGAGACATTCAGGAGGGAAACTTCCTGTGGTTCACGGTGTCATCATCCTCCTGTCCCTCCCCCTTTTCATTGTTCTGATTCCCTTGAAGCAAGGGTCCTGGCTAGGGATGTCACCCTCTCATCTTTTTTTTTTTAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATATTGGCTCACTGCAAGCTCTGCCCCGTGGGTTCAAGCAGTTATCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCACCCTCCTCGACCTTCCAAAGTGCTGAGATTACAGGCATGAGCCACAGCACCCGGCCACCCTCCCATCTTTGAGGTAGAGTCAAAGCATGTTGGAGTAATTGGGGGTCATTCATTCAACAAATGTGCCAGGCACTGTGGTTATAGCAAAGATGGACATTGTCTGGCTCCTTATAATTCGCTGTGGGTGATGAGGTTCCAGGTACTGCTTTGGAGATGCTGTGGATACAGTGATGAACAGAAAAGGCCCCTCTTCTCAGAGAGCTTTCAGAGGGGTCCCCTCACCAAAATGTGGGCATATTTCTAGTAAAAGAAAATATGCAGCCAGACAGCTGGATGCAAGCAATCACTGTTTCATTTCCAAATGTATGTAGGGCAGAAGGTCTGTCTGTGAACTAGACAGCAAGGAGGAAAAAGGAGATTGGGGTGTGGGGTGGGGAGGAGAGGTAGGAAGGAAAGAGCTGGGAGGGGGAAGATGAGAACCATTTTAAAAGCCAGTGGAGTAAACAGCACTTAAGGATGTAGCATCCCAGGATGTATGATGCCCCAAGCCCTCCATAAATTGAGGCTGATTGCTGCTGTGCAGCTGCATTCTAGAAAATACTCTGTGCTGTTTGGAACGTGACAGCCATTATCTCCGACCCTGCACTTAGCAGGTGGCTAGTGCTGTCAACTGCCTCACTCAGTGACACTGTGGCTCAGCTGAGCATGGAGCCTGGTTTTTCTGTCGCAGACCACATTGAACCCCTCCTCCCAAACGCAAATCCTTTAGAGGCACTTTACCAGGGGTTTCAGCTAAATGGACCACAGCGGTAACTGCTTTGAAAGCTGCAGCGATGGCTGCTTCCCATCTGTAAGGCTGGCTAGACATAAGAACTTAACGGCTGCCAGGCTGGGAAGGGAGGGGAGGTCGGGGGAGCTCTGAGCTCATTGCCAAACTTCTCAGGGTTTCCAACACTAAAAGTTTCATGCCTTTCTCTCTCTCCCCCCATCCCACCCCCCTGCAG
Seq C2 exon
AGAGAGACACCAAAGGGAAGATTCTCTGTTTCTTCCAAGGGATTGGGAGATTGATTTTACTTCTCGGATTTCTCTACTTTTTCGTGTGCTCCCTGGATATTCTTAGTAGCGCCTTCCAGCTGGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765:ENST00000382051:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(11.8=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTGAGGCACCTGTAACC
R:
CTCCAACCAGCTGGAAGGC
Band lengths:
262-1621
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains