HsaINT0152512 @ hg19
Intron Retention
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:HGNC Symbol;Acc:11020]
Coordinates
chr4:25664330-25665952:+
Coord C1 exon
chr4:25664330-25664464
Coord A exon
chr4:25664465-25665823
Coord C2 exon
chr4:25665824-25665952
Length
1359 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CCCATCCCACCCCCCTGCAGAGA
3' ss Score
9.47
Exon sequences
Seq C1 exon
ATAACACTGAGGCACCTGTAACCAAGATTGAACTTCTGCCGTCCTACTCCACGGCTACACTGATAGATGAGCCCACTGAGGTGGATGACCCCTGGAACCTACCCACTCTTCAGGACTCGGGGATCAAGTGGTCAG
Seq A exon
GTAAAAGTGAGGCCAGCTGAGACATTCAGGAGGGAAACTTCCTGTGGTTCACGGTGTCATCATCCTCCTGTCCCTCCCCCTTTTCATTGTTCTGATTCCCTTGAAGCAAGGGTCCTGGCTAGGGATGTCACCCTCTCATCTTTTTTTTTTTAGACGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATATTGGCTCACTGCAAGCTCTGCCCCGTGGGTTCAAGCAGTTATCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCCACCCTCCTCGACCTTCCAAAGTGCTGAGATTACAGGCATGAGCCACAGCACCCGGCCACCCTCCCATCTTTGAGGTAGAGTCAAAGCATGTTGGAGTAATTGGGGGTCATTCATTCAACAAATGTGCCAGGCACTGTGGTTATAGCAAAGATGGACATTGTCTGGCTCCTTATAATTCGCTGTGGGTGATGAGGTTCCAGGTACTGCTTTGGAGATGCTGTGGATACAGTGATGAACAGAAAAGGCCCCTCTTCTCAGAGAGCTTTCAGAGGGGTCCCCTCACCAAAATGTGGGCATATTTCTAGTAAAAGAAAATATGCAGCCAGACAGCTGGATGCAAGCAATCACTGTTTCATTTCCAAATGTATGTAGGGCAGAAGGTCTGTCTGTGAACTAGACAGCAAGGAGGAAAAAGGAGATTGGGGTGTGGGGTGGGGAGGAGAGGTAGGAAGGAAAGAGCTGGGAGGGGGAAGATGAGAACCATTTTAAAAGCCAGTGGAGTAAACAGCACTTAAGGATGTAGCATCCCAGGATGTATGATGCCCCAAGCCCTCCATAAATTGAGGCTGATTGCTGCTGTGCAGCTGCATTCTAGAAAATACTCTGTGCTGTTTGGAACGTGACAGCCATTATCTCCGACCCTGCACTTAGCAGGTGGCTAGTGCTGTCAACTGCCTCACTCAGTGACACTGTGGCTCAGCTGAGCATGGAGCCTGGTTTTTCTGTCGCAGACCACATTGAACCCCTCCTCCCAAACGCAAATCCTTTAGAGGCACTTTACCAGGGGTTTCAGCTAAATGGACCACAGCGGTAACTGCTTTGAAAGCTGCAGCGATGGCTGCTTCCCATCTGTAAGGCTGGCTAGACATAAGAACTTAACGGCTGCCAGGCTGGGAAGGGAGGGGAGGTCGGGGGAGCTCTGAGCTCATTGCCAAACTTCTCAGGGTTTCCAACACTAAAAGTTTCATGCCTTTCTCTCTCTCCCCCCATCCCACCCCCCTGCAG
Seq C2 exon
AGAGAGACACCAAAGGGAAGATTCTCTGTTTCTTCCAAGGGATTGGGAGATTGATTTTACTTCTCGGATTTCTCTACTTTTTCGTGTGCTCCCTGGATATTCTTAGTAGCGCCTTCCAGCTGGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765-SLC34A2:NM_001177998:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077877=DUF1625=PU(1.4=2.2)
A:
NA
C2:
PF077877=DUF1625=FE(59.7=100),PF0269010=Na_Pi_cotrans=PU(32.7=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACTGAGGCACCTGTAACC
R:
CTCCAACCAGCTGGAAGGC
Band lengths:
262-1621
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)