BtaINT0135295 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001545 | SLC34A2
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr6:46735857-46737055:+
Coord C1 exon
chr6:46735857-46735991
Coord A exon
chr6:46735992-46736926
Coord C2 exon
chr6:46736927-46737055
Length
935 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
TGCCTTTTCCCCTCTTCCAGAGA
3' ss Score
10.89
Exon sequences
Seq C1 exon
ATGACACCGGTACCCCTATCACCAAGATAGAACTTGTGCCGTCTCATTCCACTGCGACACTGATTGAGGAGCCCACCGAAGTGGAAGACCCCTGGGACCTGCCCGAGCTTAAGGACACGGGGCTCAAGTGGTCAG
Seq A exon
GTAAATGAGGGCAGCTGAGGCAGGTCTTTACACTGTCACCTTGGTGTCATCGTTTCCTTTCGATTGTTCAAGCAAAGGTCCTGGCTTTAAGAGTCAAGCCTCCTGTGATGACTGGGGGATCTTTCATCCTTTCGTTCATTCATTCAACAAATGAACCAAGGTTATAACCAGACCAGACCCTGTGCAGCTCCACTGTGTGCCGAACCAGGTCCCAGGCACTGCCCAGTGCCGCGGATGCAGCAGGAAATAGACGAGGCCCCATCTCTGAGACCCTGGTGGGCTGGGGAAGAGGGGTCCCCAGACCTCAACGTGGGCATCAGAGAGAGATTATAGAAGGCAGTCTACATAGACAAAACAGCAGGAATGCAAGCAGATGCCGCACTTCTGGTCCAGGCAGTAAGGTCAGTCTGCAGGTCAGGTAGAAGGGGAGGAGAGCTGGGAGGGAGGACGTGAGAACCACTTTAAAAGTGAGTGGAGAAAGCGACAGCCCAGGATGTAGCCTTCCAGGACATACGAGGGCCCAGACCCTCCCCAGATGGAGGCTGTGATTGCTACCTTGCAGCCACTTTGTTGAAAATATTCTGTGTGGTTCTGAAGGTGCTTAGAAAAGCCTTTAGCTCTGACCTCGCACTTAGCAGGGGCAAGTGCTCTTAAGTGGCTCATCAGTGACACTTGCTCTTGCCTGTGTGTGCCCCAGACCTCACCAACCCCCTCCTCCCAAGAGCCCAATCCTTTAGACATTTCACCACAGGTTTCAACTGAATAGACTCCAGTGGTAATTACTTTGAAAACTACAGCCAGCCATGAATGCATCCCATTGCTAGGTCTTGCTAGATTTAAGACTATAGCTGCCTGGCTAGGAGGGGAGTTGGGGGAGTTCTGAGCTCATCATCAAACTTCTCAGTGTTTCAGCCATGCCTTTTCCCCTCTTCCAG
Seq C2 exon
AGAGAGACACCAAAGGGAAGATTCTCTGCGTCTTCCAAGGGATTGGGAAATTTATTTTACTTCTGGTGTTTCTCTACTTCTTCGTGTGCTCCTTGGATGTCCTGAGCAGTGCCTTCCAGCTGGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001545:ENSBTAT00000002023:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.435 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(12.1=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACCGGTACCCCTATCAC
R:
CTCCAACCAGCTGGAAGGC
Band lengths:
263-1198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]