RnoINT0137614 @ rn6
Intron Retention
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60267758-60268676:-
Coord C1 exon
chr14:60268539-60268676
Coord A exon
chr14:60267887-60268538
Coord C2 exon
chr14:60267758-60267886
Length
652 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTCTCTCTTCCTGATCACAGAGA
3' ss Score
7.01
Exon sequences
Seq C1 exon
CAAATGACAGCGGGACTCCTGTAGCCAAGATTGAACTTCTACCCTCATATTCCGCCCTGGTTCTCATAGAGGAGCCCCCTGAGGGGAACGACCCCTGGGACCTGCCTGAACTCCAAGACAATGGGATCAAATGGTCAG
Seq A exon
GTAAGTGGGTGAAGGGAACTAGCCTGTCCACAGCATTTACCTCATAAAGCAGGATAACTAGGGGACGCAAAGTCCTAGGGATCAAGGTCATGATTTTGTGAATGCTGATTATGTTATGAGTGCTGAGAATAGACCCACAAGACCTGGGGTGAGCAAGAGCTTATATTTCCATTTCAGGTTTGGGGTTACAATCAAGCCCATGATGAGTCACCTAGCATAGGAGGGTGGTAGGCAGAGAAGGGAATTGAATGAGAGAGGTGAGAAATACTTTGCTAGCTCAATTGGCTGTACAAGGCCCAGGCCCTCAACAAACTTCAGCTTTTGATTGCAGGGGTTGACTCTCTGTGATTTCTGAAGATGATTTGAGAAACAGTTAACTGTTGAGCTTAACTGCTCACTACCTCAGCAACACTGTAGTTCACTTGACCGTTCGTCCATCCTGTTCTGCTGCTTCTCTGGGCCCAGACCACACTGAACTCTCCTTCCCCTCTGACTCTGTAGAAACATGAGGGTTCAGTGGAGGCTGCCCCACATCTAGGCCTTGATGTAGAAGCCAGTTGGTAGGAAGTAGAGCTGTGTGTCAGCTCCCCTGCCAAGGATCTCTGTTCAGCTCGAAGGACTCTAATTTTGCCTTCTCTCTTCCTGATCACAG
Seq C2 exon
AGAGAGACTCCAAAGGGAAGATTCTCTGCATTTTCCAGGGGATTGGGAAATTCATCCTTCTCCTGGGGTTTCTCTACTTGTTTGTGTGCTCCCTGGATGTACTCAGTAGTGCCTTCCAGCTTGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626:ENSRNOT00000048509:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.234 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(11.8=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGACAGCGGGACTCCTGTA
R:
CCAACAAGCTGGAAGGCACTA
Band lengths:
263-915
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]