MmuINT0146274 @ mm10
Intron Retention
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53058361-53059267:+
Coord C1 exon
chr5:53058361-53058498
Coord A exon
chr5:53058499-53059138
Coord C2 exon
chr5:53059139-53059267
Length
640 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCCCTCTTCCCCACCACAGAGA
3' ss Score
9.31
Exon sequences
Seq C1 exon
CAAATGACAACGGGACTCCTGTAGCCAAGACTGAACTGCTACCCTCCTATTCCGCCCTGGTTCTCATAGAGGAGCATCCCGAGGGGACGGACCCCTGGGACCTGCCTGAACTCCAGGACACTGGGATCAAATGGTCAG
Seq A exon
GTAAGCGGATGTCCAGCATACAGCAGAGGCCAGAAAAAGGACCCAGCCTGTCCATAGCATTTCCCTTTGTGTGTCTCCTGTACCAGGGTTCTGAGGCAGAGTAACTAGAGGACCCTTTGTTCTTTCACTCAAAGTATCAGGGAACAGTCATGACACATTTGTGTGGATGCTGATAATGTTAGGCTTTAGGGGCTGAGAGTACAGCCAGAAGACTTGGGGTGATCAAGTGTGGGGTTACGATCAAGCCCAAGACAGCTAGGAAAGGCTTGGGTGGTAGGGGGAGAAGGGGATTGATTGCTGGGATTGATTGATTATCTCTGCTTTCTGAAGATGCTTTGAGAAGCAGTTAACTGCTTGCTTAGCTACTCACTACCTCAACAACACCGCAGTTCACTTGACGGGCCATCTATCCATCCTGGTCTGCTGCTCTGCTGGGCCCACACCACACTGCACTCTCCTTCCCCTCTGACTCTCTAGAAACACACCGAAAGGTTCAGCAGTGGAGACTGCCTCACACCCAGGCCTTGATAGAAGCCAGTTGGGAGAAGGTAGAGCTGTACGCAAGCTCCCTTGCCAAGCATCTCTGTTCCTCCCTAAGAACTCTATCTAACTGCTGTGCCTTCCCTCTTCCCCACCACAG
Seq C2 exon
AGAGAGACACCAAAGGGAAGACGCTCTGCATTTTCCAGGGGGTTGGGAAGTTCATTCTTCTCCTGGGGTTTCTCTACTTGTTCGTGTGCTCCCTGGATGTACTGAGCAGCGCCTTCCAGCTTGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188:ENSMUST00000094787:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0269010=Na_Pi_cotrans=PU(11.8=38.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAACGGGACTCCTGTAGC
R:
CTCCAACAAGCTGGAAGGCG
Band lengths:
263-903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types