MmuINT0150766 @ mm9
Intron Retention
Gene
ENSMUSG00000048562 | Sp8
Description
trans-acting transcription factor 8 [Source:MGI Symbol;Acc:MGI:2443471]
Coordinates
chr12:120086011-120091051:+
Coord C1 exon
chr12:120086011-120086127
Coord A exon
chr12:120086128-120086851
Coord C2 exon
chr12:120086852-120091051
Length
724 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
CTTCTCTGCTCCGGTCTCAGGAA
3' ss Score
8.83
Exon sequences
Seq C1 exon
CACAGGAAAGGTTCGTAGGGCATTGAGACCCGCCACCTCGCAGAGCCTGGCCGCTCCCTGCTCGGGAGAACTGAGCATAGCCCCTAATACACTCGACGATTTCGAAGGGGAACGCGA
Seq A exon
GTAAGTTTTTCCCTCCTGGGCATACTGCAGATTCTCCCCCTTCCCCTTAATATTTTTCCTCAGCCCGGTTTGTATTGCAGGTACGTTGAGCTCGTCTTATTTCTACCATTATAGAGAGATATATATTGAGAGAGAGAGATGAAGGGGGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAAAAATGGAAGAGCGAGTAATGGAAGAGCCGGGGAGAAGCAACTAAGGATGGGTTGAGGGGGATCTGAAAAGAGTTTTCAAAGCTCTCTTGGGATTGCAGTGTAGTGATCTTAAACGCAATCCAGAAATTTCCCCAGGTTGTAAGGTAAAAAGGAAACTTCTCCCTCCCTAGTCTGGATTTGGACTTTCTGTTCGTTTGATCGAAAGCGTCTAGGGCTTTGTGAACACAAGAGTGCCGTCTTAGTTGAGAATTCTTGTTAAACTCTTCTTTAGCGTGGCGCTTTGCTCCAGAATCAGACGCTCGCCGCCAAACTTGTCCCCTCCTGTAGAGTAGGAGGCAGCCGGGCGCCGGGGCAGCTGGGGGTGCAGGGTAAGTTGGTGGCAGTGTGCAGCAGCTAGAGATGGGGAGCAGTGGGGCGTCTGGAGGCTACCAGGGGACTAATACACATTTCTTTCCTCCCTCCCCCACCGGCCCTTTGCCCACTACCCCTCCCCCACCCTTCTTCTCTGCTCCGGTCTCAG
Seq C2 exon
GAAGAACCGAGGTTGGGATCCACTCCTCTGGCCATGCTTGCTGCTACCTGTAATAAGATCGGCAGCCCCAGCCCGTCTCCCTCCTCCCTGTCGGACAGCTCTTCTTCCTTCGGTAAAGGCTTCCACCCTTGGAAACGCTCCTCGTCTTCCTCCTCCGGCAGCTGCAACGTAGTGGGTTCCAGTCTCTCTAGCTTCGGTGTGTCGGGGGCCTCCCGGAACGGCGGCTCCTCCTCAGCCGCAGCGGCGGCAGCGGCGGCAGCAGCGGCGGCCGCAGCCCTGGTGTCCGACTCTTTTAGCTGCGGAGGCTCGCCCGGCTCCAGCGCCTTCTCTCTCACCTCCAGCAGCGCCGCCGCAGCGGCAGCAGCTGCGGCGGCTGCCGCTTCCAGCTCGCCCTTTGCCAACGACTACTCTGTGTTCCAGGCTCCGGGCGTCTCGGGGGGCAGCGGCGGCGGCGGCGGGGGAGGCGGCGGCGGTTCCGGAGCGCACTCGCAGGATAGCTCCCATCAGCCAGTGTTTATCTCCAAGGTGCACACGTCGGTGGACGGACTGCAGGGTATCTACCCGCGCGTGGGAATGGCGCACCCGTATGAGTCCTGGTTCAAGCCTTCGCACCCGGGCCTTGGCGCCGCGGCCGACGTGGGCTCCGCGGGCGCCTCCAGCTGGTGGGATGTGGGCGCGGGCTGGATCGACGTGCAGAACCCCAATGGGGCGGCAGCGCTGCCCGGCTCGCTGCACCCGGCGGCCGGGGGCCTTCAGACGTCGCTGCATTCACCGCTGGGAGGCTACAACTCGGATTATTCCGGCCTGAGCCACTCCGCATTCAGTAGCGGTGCCTCGTCGCACCTGCTCAGCCCTGCAGGACAGCACCTCATGGACGGTTTCAAGCCGGTATTGCCCGGCTCTTACCCCGATTCCGCCCCGTCGCCGCTGGCCGGCGCGGGCAGCTCCATGCTGAGCGCGGGGCCCGCGGCGCAGTTAGGGGGGTCCCCACGCTCGTCCGCTCGCCGCTACTCCGGCCGCGCCACTTGCGACTGCCCCAACTGCCAGGAGGCTGAGCGGCTGGGCCCAGCGGGAGCGAGCCTGCGTCGCAAAGGGCTGCATAGCTGCCACATCCCGGGCTGCGGCAAGGTGTACGGCAAGACGTCGCACCTGAAGGCGCACCTGCGTTGGCACACCGGCGAGCGGCCGTTCGTGTGCAATTGGCTGTTCTGCGGTAAGCGCTTTACGCGCTCCGACGAGCTGCAGCGGCACCTGCGGACCCACACGGGCGAGAAGCGCTTCGCCTGCCCGGTGTGCAACAAACGCTTCATGCGCAGCGACCACCTGAGCAAGCACGTGAAGACACACAGTGGTGGCGGCGGCTCGGCGGGCTCCGGCGGCGGCAAGAAAGGCAGCGACACCGACAGCGAGCACAGCGCGGCGGGAAGCCCTCCTTGCCACTCCCCTGAGCTGTTGCAGCCTCCAGAGCCGGGCCACCGCAACGGCCTGGAGTGACTGTCGCGATGCCTCCCACCTGAATCCCGTCGGGCTTGTGTACCTAGACTGGGCTCCAGTCTAGGCTAGCTGTGCGTTCTTTCCCCCAACTTCTCATTCTCTCTCTCACCGGTTTTCTGCTCTTAACTTTTAGGATGTGGACAGTAAGTAGCACACATCGGTGGCTGAATCCTTGGCTCCCTTCTGCACAGTGACAGCCATGCGGGGCGCAGTGGAAACCCGCTCCTCCAGCACTGGGCTGGCGGAACTTTGAAGAGGCTGTGGCCTCTGGGGTTAGGACGGGATGAATGGGTTGTCTGGTAGAACAGTGGCTTTTGTGGCCTTGGAAAGAACAGTGTTCAACCCGCTTGAGCCGCAGCTGTAGGGAGAGGGATGTAGGAGTCCTGCCAAGGAATCCCCTCCTGGACCCCCGAGTGCTCCCCTTGGACTGTCCTGTGCTGAGCATTACACTCGTGGGAGGACTGCTGCAACCCAGACCGGGTTAGCAGAGTTTAGATCTCCCCATTCAGCTCTGGCTAGGTCTTTGTGCCCTGCGGGTGAACCGATGAGAGTTCTGCGAACGGGAATCAATGCCTCCCCCTCCTTTCTTCTTTGTAACTTTTTATTTTTTAACTGAAAAACTGAGAGGAAAAAAATAAACAAGCAATCTTCCTCTTAGCTTCTCGTTTAGATAGTTTTCCTCTGCTTGCGAGCACGTTTCTCTCCAAACTGCAAATATTGATCCCAAAGTTATTTTGGTCGCCGTAATTTATGGGGTGGGGGCGGGAGTGAGGGTAGGTGTCTTTTCTTATGCAAAAATACCCCCTTTCCGGTGAGACCAGATTAAGTATCTTCGTGTTTGTCTTTTTCTACCTCGGTTTTTTCACCATCCCCAAGCATATTCTTCCAACTTCCCACATCACCACCACTTTTGGGTTAGTCTAGGAATCAATTTATCTACTGATTTCTGTAAATTATTGCAAGTCATTGATTAATTTTAGGGTTAAACTTTTTCTTTGTGATTTAAACTTAAGTGAAGAAGCTATCGTTTATTTCAGATGAGGCTGTAGTTTAAATGCCAAAAGAGGGAAACGGGGAAACAATTTTTAAAAATTCTTTGTAAAATATATCTGAACCTAATGGTTTGTACAACTGGAAAATCGTTCTAGATTAGTTTCCCATTAAACTTGACTCCGCCGCTGTGAGGTGTGAGACGATTTTGTATAGTATTTTTCTTGTACATTACTTCCGGTAAATATTTGAAAATATATTGAAGTAAACTTGATTTTTTTTCTTTTTCGTCAGAAGGAATTATTAAGAGTTATTGCTGAGGTTCTAATGAGCTGCAGGTGTTTTTTTTTTTTTTTTTTTTTTCCTTTTTCTTTTTTCCTTGAACTCAATTCTGGAGGTGCAGAGCCACACACGCACTTTCCGGGCCTAGTTTTGCTCGAATATGAATTTAGATAGGTATCAAGCTGTAACTAAGACACTATTTGATAAATGTTGGATGACATTTAATTTAATGGCGCATGTACTTATTTGCATTTGCTGGCAGTTCAGGTATAGTTAAAGTGAGAGTTCTCCTATACTTCATAATAACGGGGTCTGCCAAACCCATGTATTAAATAAATTGTCCAAGTGATACTCGACTAACTTTGGCCTTTGTGTATTTCCTGAAGGTGATATTGTTAACTGTTGACAAATACTCCTGACACTACATTTAAGTGTTGTTTGCAGAGTCTGCAAACTAACTATTCATTGTCATGTTGAAATAATTTGGATATTTCACATTGAAATGAAAAGCCTTTCTCTGGAACATTAGACTTGCATTTTAAATGCATGAAATGTAATTGATTTATTTGTAATATTTTAAATGGTATTAATAAACTCAAAAAAGACTAGGTCAGTTAATTTGGTGTTTTTCCCCCCCTTTTAAAACTACGGGCATTTGCATTTTATCTTCCGTTTTAATGTCTAATTTAAACAAAATATGACCCTGTTTTTTGTGGCAATATTTAATTATTTGCCTTTAAGATATTATGTAGATGGAAGATCTATTTGGCAAAGCTGTTTCTTTGTTTACCAAGATAAAGATTATAGTGTCTAAGATATGTAATTAATTATTTACCATTAGATTTAGCTCAGCACCAGGATTTATTGACCTCTTAAAACTTGTAGTAATTCACAAACAATTCAAAGAAATTCCATGTTGCTGCTTCCTTCTCAGTCTTCAGAAGGAGTCAGGTTGTTGGCCTTTGATCGAGTTTAGTGTTTGAAAGGCCAAGACTTAGATGAAAGATCAATACATCTAAAATAAAAGCATCATTTGGGGATACCTTCTGTTAGGAGACAGAGGGGGTCAAGCTAACAAAAGCTTGTTTTCTGGCACTCTATGTCTTAGCTAAACATTCTGCAGAGGTAAATATCAGTAGATTCCTGTTGAAATGAGTTATCTGTTCTTTAAAAGTCTCTAAACAGCCACCAAAGAAAAGAAAGGTTAAACCTTAATCTATCTACGAGGCTATTGTTCAAAGGTGTCAATGATGCCAATAAAAAAACATTGTCTTGTTATGTCTAAGTGCATTTAAGCAATGGGTGTTCCTTGAGCCATACTTTGAAACATAGTATACTTTAAATGTTGATTGATGTTATATCAAACTATTTCACTATTAGATTAATATTATTTTGAATCAAACTTAATAAAAAGTTAGTGTGTTGAGATTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048562-Sp8:NM_177082:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=4.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACTGAGCATAGCCCCT
R:
CTCCGCAGCTAAAAGAGTCGG
Band lengths:
357-1081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: