BtaINT0139339 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002604 | SP8
Description
Sp8 transcription factor [Source:HGNC Symbol;Acc:HGNC:19196]
Coordinates
chr4:29595419-29597808:-
Coord C1 exon
chr4:29597788-29597808
Coord A exon
chr4:29596787-29597787
Coord C2 exon
chr4:29595419-29596786
Length
1001 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TTCTCCTCTCCTTCTCTCAGGAA
3' ss Score
11.15
Exon sequences
Seq C1 exon
ATGGCAACTTCACTTCTAGGG
Seq A exon
GTGAGTCTCAGGATTTTCTCTTGCTGGTTTAATTAGTTTTCTTTTATTGCCGATCGGAGGGGGTTAAAGTCGCCCCGGCCAGGCCACGGGCTATCGGTCTCTATTGAGAGCTTTTTTCCTCCCCCCTTTAAATACAAGTGAGTTTAGAGAAAAGAAAGAGGGGGAGGGGGGGGGGCAGAGTCACTTTTTTCAGCGCAGGAAAAGGTTCGGAGGGCATTTAGACAAGCCACCTCGCAGCGCCCGGCCGCTCCCCGCCCCGGAGACGTGCGTCCAGCCTATTTTACGTGAGACGATTTAGGGGGTAAAGAGAGCAAGTTTTTCCTCCTGGGCAAATTGCAGATTTTTCTCTCTTCCCCTTAAAAAATTCCTCAGCCCGCCTTGTCTTGCAGGTACGTTGAACCCGTCTCTCTCTCTCATTTTCTCTTTTTTAGTATTGTAGACTTTTTTTTTTTTTTTTTTAAGAAAATCAGGAAGAGCGATCGAGCCCTACAGTTTCACGTCTTTTGGCCTGGGAGAAACAACCCAGGATGGGTTTCTGGGAACTGCAACAGGATTTTCAAAGCTCTTCTGTGGATTTCAGGAGTAGCTCTTAAAACCAATCCAATGGTTTTTCCCCAGGCTTCTCCGCAAAGGAATCTTCCTTCCTCCCCAATCTGGACTTTCTGCTTGCTTGTTTGTTTCGAAGTGCCTGGGGCCTTGTGTGCATAAGAGTGTTGTTTTAGGTGAGAATACTTGTCAAACTCTTCTTTAGCGTGGCGCTTTACTCCCGAATCAGACGCCGGCAGCCAAACTTGTCCCCTCCCGTAGAGTAGGAAGCAGCCGGGCGCCGGGGCTGTTGGGGGAGCCAGGTGAGTTGGTGGCGCCGTGCCGCAGCGAGAAATGGGGTGCACTGGGGGCGTTTTGGAGGCTACTGGAGGACTGATGCACATTTCCTTCCTCCCTCCCCCACCGGACTTTTGCCCACCTCCCCTCCCCCACCCCTTCTCCTCTCCTTCTCTCAG
Seq C2 exon
GAAGAACCGAGGTTGGGATCGACTCCTTTGGCCATGCTTGCTGCTACCTGTAATAAGATCGGCAGCCCCAGCCCGTCTCCCTCCTCCCTCTCGGACAGCTCATCTTCCTTCGGCAAAGGCTTCCACCCCTGGAAACGGTCCTCGTCCTCTTCCTCAGGCAGCTGCAACGTAGTGGGCTCCAGTCTCTCAAGCTTCGGCGTGTCAGGGCCCTCCAGAAACGGCGGCTCGTCCTCGGCCGCGGCGGCGGCCGCCTCGAGCTCTCCCTTCGCAAACGACTACTCGGTGTTCCAGGCCCCTGGCGTGTCGGGGGGCAGCGGCGGCGGCGGTGGCGGCGGCGGCTCCTCGGCACACTCGCAGGACGGCTCCCACCAGCCCGTGTTCATCTCTAAGGTGCACACCTCTGTGGACGGGCTGCAGGGCATCTACCCGCGCGTAGGCATGGCGCACCCTTACGAGTCGTGGTTCAAGCCCTCGCATCCCGGCCTGGGCGCCGCCGGCGAAGTGGGGTCGGCAGGCGCCTCCAGCTGGTGGGACGTGGGCGCGGGCTGGATCGACGTGCAGAACCCGAATGGCGCGGCGGCGCTGCCCGGCTCCCTGCACCCCGCCGCCGGGGGGCTCCAAACCTCGCTGCACTCGCCGCTCGGAGGCTACAACTCGGATTACTCAGGCCTGAGCCACTCAGCCTTCAGCAGCGGTGCCTCTTCGCACCTGCTCAGCCCCGCGGGGCAACACCTCATGGACGGCTTCAAGCCAGTGCTGCCCGGCACCTACCCGGACTCGGCCCCGTCGCCGCTGGCCGGCGCTGGGGGCTCCATGCTGAGCGCGGGGCCGTCGGCGCCTCTGGGGGGCTCCCCGCGCTCTTCAGCCCGCCGCTACTCCGGCCGCGCCACCTGCGACTGCCCCAACTGCCAAGAGGCGGAGCGTCTGGGCCCGGCCGGGGCGAGCCTGCGGCGCAAGGGCCTGCACAGCTGCCATATCCCGGGTTGCGGCAAGGTGTACGGCAAGACGTCGCACCTCAAAGCGCACCTGCGCTGGCACACGGGCGAGCGGCCCTTCGTGTGCAACTGGCTCTTCTGCGGCAAGCGCTTCACGCGCTCCGATGAGCTTCAGCGGCACCTTCGGACCCACACCGGCGAGAAGCGCTTCGCCTGCCCCGTGTGCAACAAGCGCTTCATGCGCAGCGACCACCTCAGCAAGCACGTGAAGACGCACAGCGGCGGCGGCGGCGGCGGCTCGGCGGGGTCCGGAAGCGGCGGCAAGAAGGGCAGCGACACCGACAGCGAGCACAGCGCCGCAGGCAGCCCGCCTTGCCACTCCCCGGAGCTGCTGCCGCCCCCCGAGCCCGGGCACCGAAACGGCCTGGAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002604:ENSBTAT00000003368:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAACTTCACTTCTAGGG
R:
GAGTGTGCCGAGGAGCCG
Band lengths:
374-1375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]