HsaINT0157112 @ hg19
Intron Retention
Gene
ENSG00000164651 | SP8
Description
Sp8 transcription factor [Source:HGNC Symbol;Acc:19196]
Coordinates
chr7:20821894-20826508:-
Coord C1 exon
chr7:20826397-20826508
Coord A exon
chr7:20825415-20826396
Coord C2 exon
chr7:20821894-20825414
Length
982 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
TTCTCCTCTCCTCCTCGCAGGAA
3' ss Score
12.13
Exon sequences
Seq C1 exon
ATCATTGTATTGCACACCTCTAAAAAAAACACTGCCTCTGATTTATCAATATAAAAAAGATCCTCTGAGAGGAGGAGGGCACTTTTGTGTGATGGCAACTTCACTTCTAGGG
Seq A exon
GTGAGTCTCAGGATTTTCTCTTGCTGGTTTAATTAGTTTCCTTTTATTGCCGATTGGAGGGGGTTAAAGTCGCCCCGGCCAGGCCACGGGCTATCAGTCTCTCTATTGAGAGCTTTTTTTTTTTTTCTTTAAATACAAGTGAGTTTGGAGAAAAGAAAAAGGGGGAGAAGGGGGCAGAGTCACTTTTTTTCAGCGCAGGAAAAGGTTCGAAGGGCATTTAGACAAGCCACCGCGCAGCGCCTCGCTGCTCCCTGCCCGGGAGACCTGCGTCCAGCCCATTTTACAGGCACCGATTTCGGGGGTAAAGAGAGCAAGTTTTTCCTTCTGGGCAAAGTGCAGATTCTTCCCCTAACCCTTAAAAAAAAATTCTGCAGCCCGCCTTGTCTCGCAGGTACGTTGAACTCGTCTCGTTTTTACTACTGTAGATATGCTTTTAAAAAAAGAAAGAAAGAAAAGCAGGAAGAAAGAGTGAGCCCTACAGTTTGATTTCTTTTGGCCTGGGAGAAACAACCCAGGATGGGTTTCTGGGGACCCGAACAGGTTTTTCAAAGCTCTCCGGATTACAGGGAAGCGCTCTTAAAAGCAATCCAATGGTTTTCCCCCAGGCTTCTCGGCAAAGAAAACTTCCTTCCTCTCCAATCTGGACTTTTTGCTTGTTTGTTACGAAGTGTCTGGGGCTTTGTGTGCAAGAGAGTGTTGTTTTAGGTGAGAATACTTGTCAAACTCTTCTTTAGCGTGGTGCTTGCTCCCGAATCAGACGCCGGCAGCCAAACTTGTCCCCTCCTGTAGAGTAGGAAGCGGCCGGGCGCCGGGGCTGTTGGGGGTGCCAGGTGAGTTGGTGGCGGCGCGCCGCAGCGAGAGATGGGGTGCAGTGGGGCGCTTTGGAGGCTACCGAAGGACTGATGCACATTTCTTCCTTTCCTCCCCCACCGGCCCTTTGCCCACCTCCCCTCCCCCACTCCTTCTCCTCTCCTCCTCGCAG
Seq C2 exon
GAAGAACCGAGGTTGGGATCGACTCCTCTGGCCATGCTTGCCGCTACCTGTAATAAGATAGGCAGCCCCAGCCCGTCTCCCTCCTCCCTCTCGGACAGCTCTTCTTCCTTCGGCAAAGGCTTCCACCCCTGGAAACGCTCCTCGTCCTCTTCTTCCGCCAGCTGCAACGTAGTGGGTTCCAGTCTCTCAAGCTTCGGCGTGTCCGGGGCCTCCAGGAACGGCGGCTCGTCCTCGGCGGCTGCGGCGGCCGCGGCAGCAGCCGCGGCTGCCGCGGCCCTGGTGTCCGACTCGTTCAGCTGCGGCGGCTCGCCTGGCTCCAGCGCCTTCTCCCTCACCTCCAGCAGCGCCGCAGCCGCCGCCGCCGCCGCCGCAGCCGCCGCCTCCAGCTCGCCCTTCGCCAACGACTACTCTGTTTTCCAGGCCCCCGGAGTTTCCGGGGGCAGCGGCGGCGGCGGCGGGGGCGGCGGCGGCGGCTCCTCCGCGCACTCGCAGGACGGCTCCCACCAGCCGGTGTTCATCTCCAAGGTGCACACCTCTGTGGACGGGCTGCAGGGCATCTACCCGCGGGTGGGCATGGCGCACCCGTACGAGTCGTGGTTTAAGCCCTCGCACCCGGGCCTGGGTGCTGCGGGCGAGGTGGGCTCGGCCGGCGCCTCCAGCTGGTGGGACGTGGGGGCCGGCTGGATCGACGTGCAGAACCCGAACAGCGCGGCTGCGCTGCCCGGCTCGCTGCACCCTGCCGCCGGGGGGCTCCAAACCTCGCTGCACTCGCCGCTCGGAGGCTACAACTCGGATTACTCGGGCCTGAGTCACTCGGCCTTCAGCAGCGGCGCCTCCTCGCACCTGCTCAGCCCCGCCGGGCAGCACCTCATGGACGGCTTCAAGCCAGTGCTACCCGGCTCCTACCCGGACTCGGCCCCGTCGCCGCTGGCCGGCGCGGGGGGCTCCATGTTGAGCGCTGGGCCTTCGGCGCCGCTGGGGGGCTCCCCGCGCTCCTCAGCTCGCCGCTACTCCGGCCGCGCCACCTGCGACTGCCCCAACTGCCAGGAGGCAGAGCGGCTGGGCCCTGCCGGGGCGAGCTTGCGGCGCAAGGGCCTGCACAGCTGCCACATCCCGGGCTGCGGCAAGGTGTACGGCAAGACTTCGCACCTCAAGGCGCACCTGCGCTGGCACACGGGCGAGCGGCCCTTCGTGTGCAACTGGCTTTTCTGCGGCAAGCGCTTCACGCGCTCCGACGAGCTGCAGCGGCACCTGCGGACCCACACCGGCGAGAAGCGCTTCGCCTGTCCAGTTTGCAACAAGCGCTTCATGCGCAGCGACCACCTCAGCAAGCACGTGAAGACGCACAGTGGCGGCGGCGGCGGCGGCGGCTCGGCGGGCTCGGGCAGCGGCGGCAAGAAGGGCAGCGACACCGACAGCGAGCACAGCGCCGCGGGCAGCCCGCCCTGCCACTCCCCAGAGCTGCTGCAGCCCCCCGAGCCCGGGCACCGCAACGGCCTAGAGTGACGCCCACCCTGCGCCCGCCCCTCTCCCCGACCTCCTCCCACCAAGTCCTCTTGGGCCCTGTCTGTCCGGACTTCAACTCCAGCCTTTCCCTATTGCATCCGACTCGCTCTCTGTCTCTTTCTGTTTCTGCCCCTCTTCCTTCTTCCTTCTGTGACTTAACTTTGTAAAGGGGATATGGACAAGTAAGTAACACGCATCGCTGTCCCGGGCCCTGGCTTTCCCTTTCCACGGGTAACGCTGCCTGAACCCGTTGCAGCCGGAACCCGCGCCTCGTCGGGCCTTTATTTCTCGTTCTCTCTTCCTTGTCCTCCCCTCCTCCACCCCCCAGGTTGTGAAGGGCGTAACTTTTAGAGGGAACGGCCACTGGAGGTAGAGCTGGACTAATCCAGTGCCTGGTAGACAGCGGGCCTCGCGCGGGCAGGAGCGGCTCGGCTGACAAGCCTGAGCGGAGCGGTGGAGAGGGAGAGGCTGGAGGCCTGGGCAGAACAGCGCCGCCCGGGCAGACGGCTGCTTGGTTCCAGAGCCGCTGTACTGAGCACCTCGGCTTCGGAGCACCCTGCCAGGCCCCTGGGCATCGCCGGACGTCCTACTCAGGCTGTCGGGGCTTGGTGGGGGTGACTTTTGGCAGCCCGAGACCCAGAGTTTGTAGAGTTTAGATCTCCCAATGTCAGTCTGCCTCTTTTTCTTTGTTCCCTGAGGTGGAACCGATGCAAGTTTCAGCAAAGGGCAGTCTTGTCGAATCGCTGCAGCAGCTTTCTTTCATCTTTATAGCATATATTTTATTTTTAAAAAAACTAGGGGGAAAATAGCAACCTTCCATTTGGTTTCCCTTCTATAATAGTTTTTTCCTCTAACGGGGAGCAATCTTTCTCTCGAAACTGCTAATATTGATCCCAAAGTTACTTTGACTGCATTAACTTAACTTACGGGGTGGGGGCGGGGGTGAGGGTAGGTGCTTTTTTCTTATGCAAAAATACTCCTTTCCGGTGAGACCAGATTAACTATCTCCATGTTTGTCCTTTTCTACCTCGTTTTTTCACCACTCCCAAACATAACCTCCCAATCTTTTTTGTTAGTCCGGCCGTCAATTGTATAGTACCAATTTCGTAAATTCTCTCAATTCATGAAGATCGTAGGGTTAAACTTTTTTGTGTGTGATTTAAACTTACAAACAAGTGAAGAAGCTATCGTTTATTTCAGACGAGGCTGTAGTTTAAATACCAAAAGAGGGAAAATAAAAAAGAACCTTTGTAAAATATATCTGAACCTAATGGTTTGTACAACTGGAGAATCGTTCTAGATTAGTTACCAATTAAATATAACTCCGCCAGTGTAAGGGTGTGAGGTGCAGTTGTCCAGGAGACGATTTTGTATAGTATTTTTCTTGTACATTACTTCCAGTAAATATTTGAAAATATATTGAAGTAAACTTGATTTTTTTTTTTTGTCACAAGAAAATATTAAGAGTTATTGTTGCAGTTCTGATGAGCTGCAGGTTTTTTGAACTCACTTCTGGAGGTGCAGAGCCACAAACGCACTTTCGGGGCCTAGTTTTGCTCGAATATGAATTTAGATAGGTATCAAGCTGTAACTAAGACAATATTGATAAATGTTGGATGACATTTAATTTAATGGAGCATGTACTTATTTGCATTTGCTGGCAGTTCAGGCATAGTTAAAGTGAGAGTTCTCCTATATTTCATAATAAGTGGTCTGCCAAAACCCATGTATTAAATAAATTGTCCAAGTGAAACTCGACTAACTTTGGCCTTTGTGTATTTCCTGAAGGTAATATTGTTAACTGTTAATAAATACTTCTGACACTACATTTAAATGTTTGCAGATTCTGCAAACTAATTGCTCATTGTAATGTTGAAATAATTTGGATATTTCACATTGAAATGAAAAGCCTTTCTCTGGAGCATTTTAGATTTGCATTTTAAATGCATGAAATGTAATTGATTTATTTGTAATATTTTAAATGGTATAATAAACTCAGATAAAAGACTAGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164651-SP8:NM_182700:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=NA C2=0.269
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=4.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGGAGGGCACTTTTGT
R:
CAGCTGAACGAGTCGGACAC
Band lengths:
344-1326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)