MmuINT0151735 @ mm9
Intron Retention
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29881531-29882337:+
Coord C1 exon
chr2:29881531-29881740
Coord A exon
chr2:29881741-29882040
Coord C2 exon
chr2:29882041-29882337
Length
300 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTTGCCCCTCTACTTCTAGGTA
3' ss Score
12.16
Exon sequences
Seq C1 exon
GAGACATTTGATGCTGGCCTGCAGGCCTTCCAGCAGGAGGGTATTGCCAATATCACTGCCCTCAAAGACCAGCTGCTAGCTGCCAAGCACATTCAGTCTAAGGCCATCGAGGCCCGACATGCCTCCCTCATGAAGAGGTGGACCCAGCTGTTGGCCAATTCAGCTACCCGGAAGAAGAAGTTGCTGGAGGCCCAGAGTCATTTCCGTAAG
Seq A exon
GTAAGGGTAGGATTGAGCTGGCTCGGTGGGATGGACGGTAGACCCATGTGCCTCGCTGTGCCGCCATCCTGGGAGGAAGAAGGAACCTCAGTGGAACCTGAGGCATATGGGGCCCTTGAACTTGGGCGAATTTATCCTTTGACCCTCCCAGGACAAGCATAGCTCGTGCTGAGGAACAGCAGGCAGAAGACTAGTCAGGAAGATTTTGAGATGGGCAGAGTGCACCAGACCCCCAGCAGACCCTACTCGTTGATTCCCAAAACTTCCTCACCCACTGGCATTTTGCCCCTCTACTTCTAG
Seq C2 exon
GTAGAAGACCTCTTCCTGACCTTTGCCAAAAAGGCATCGGCTTTCAATAGCTGGTTTGAGAATGCAGAGGAAGACCTCACAGACCCAGTGCGCTGCAACTCTCTGGAAGAAATCAAAGCCCTTCGAGAGGCTCACGATGCCTTCCGCTCATCCCTCAGCTCTGCACAGGCTGACTTCAACCAGCTAGCCGAGCTGGACCGCCAGATCAAGAGTTTCCGGGTGGCCTCCAACCCCTATACCTGGTTCACGATGGAGGCCCTGGAAGAGACCTGGAGAAACCTCCAGAAGATCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-Spna2:NM_001076554:47
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(58.5=88.6)
A:
NA
C2:
PF0043516=Spectrin=PU(91.4=97.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAAAGACCAGCTGCTAGC
R:
CTCGGCTAGCTGGTTGAAGTC
Band lengths:
343-643
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: