MmuINT0153371 @ mm9
Intron Retention
Gene
ENSMUSG00000042286 | Stab1
Description
stabilin 1 [Source:MGI Symbol;Acc:MGI:2178742]
Coordinates
chr14:31955158-31956053:-
Coord C1 exon
chr14:31955855-31956053
Coord A exon
chr14:31955308-31955854
Coord C2 exon
chr14:31955158-31955307
Length
547 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
GCATCTACACTATTCCCTAGCTT
3' ss Score
3.44
Exon sequences
Seq C1 exon
GGCAGCCCTGAGACCTGCTGGCGTCACTACTCCAAGTTCTGGACAACTCCATTGCACTCCATCTCAATGCGTGGAGCTTACTGGATACCGTCTAGTTTTTGGAATCGTAACCACATGAGTAGGGGCTGCCACCGAAACTGTGTCACCACCGTCTGGAAGCCCAGCTGTTGCCCTGGTCACTATGGCATTAACTGCCATG
Seq A exon
GTAAGCATCCAGAGGGTTACAGACAACCTGACCAGTTTCTCTAGTCCCCAAGATGGCCGAAGACAAAGCTCTAGTCATCGCCCTTAAGATAGATATTGGGGGCTGGAGAGATGGCTCAGAGGCTAAGAGCACTGGCTACTCTTCAAGAGGACTCAGGTTCAATTTCCAGCACCTACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGCCAGCAGGTTTACATGCAGATAGAGTACTCATACATAAAATAAATGAATTTTTTAAAAAGGATATTGGGGTGCTCTAGGGTGGGGGAATGCATAAGAAGTGGGGGAGGTATACAGAAGATTTGTATCTGGTGTGGAGTGCTGGAAGGCTTGGGCATTTTCTGGGTTTGGTGTGATCTCAGTGGTGTGGGGACATGAGTGGACTGATACTCCTTGGAGAGCCTTGGCTGGCATCTGGTAAGGCACAGGTGGCAGAACCAGATACAGGTGTGTGTGTGTTCTTATGAGAGAGTCTGGTCCCATTTCGCATCTACACTATTCCCTAG
Seq C2 exon
CTTGCCCTGGTGGCCCCAGAAGCCCCTGCAGTGACCATGGCGTGTGCCTGGATGGTATACGTGGAAGTGGGCAGTGTAATTGCCATCCGGGTTTTGCTGGGACAGCCTGTGAACTCTGTGCCCCAGGTGCCTTTGGACCCCAGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042286-Stab1:NM_138672:55
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=92.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGACCTGCTGGCGTCA
R:
CTTGGCACTGGGGTCCAAAG
Band lengths:
342-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: