HsaINT0160005 @ hg38
Intron Retention
Gene
ENSG00000010327 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr3:52520804-52521510:+
Coord C1 exon
chr3:52520804-52521005
Coord A exon
chr3:52521006-52521360
Coord C2 exon
chr3:52521361-52521510
Length
355 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCTCCTACCCCATCCCCAGCTT
3' ss Score
6.59
Exon sequences
Seq C1 exon
GGCAGCCCTGAGGCCTGCTGGCGCTTCTACCCGAAGTTCTGGACGTCCCCTCCGCTGCACTCTTTGGGATTACGCAGCGTCTGGGTCCACCCCAGCCTTTGGGGTAGGCCCCAAGGCCTGGGCAGGGGCTGCCACCGCAATTGTGTCACCACCACCTGGAAGCCCAGCTGCTGCCCTGGTCACTATGGCAGTGAGTGCCAAG
Seq A exon
GTGAGCATTGCAGACACTGTTGACTAGCTCCTCTGTTCCCCAAGAGAGCCAAGGCACAGCTCTGGCCATTGTCCTTGAGAGAGTGTTGGGGCGTCCAGGGCTGGGGAGCTCTGGGTGGTGAGTAGATTTTACTAGCGGGAGTGCTCGGGAGAGGCATGGCGGTAGTGTGGACGGTGCAGAACCTGGGGAGGAGTGCTGGGGGGTCTGGATGTTCTCCAGGACATGGGCCTGGAGGGATCTTAGCAGTGGGCGGACATAGGTCAGGGACAGATGGCAGGGCTAGGCTGGAGGTACGTATATGGGGGTCCTGGTGAGAGCCCCTGGCCCCACCTCACTTCTCCTACCCCATCCCCAG
Seq C2 exon
CTTGCCCTGGCGGCCCCAGCAGCCCTTGTAGTGACCGTGGCGTGTGCATGGACGGCATGAGTGGCAGTGGGCAGTGTCTGTGCCGTTCAGGTTTTGCTGGGACAGCCTGTGAACTCTGTGCTCCTGGTGCCTTTGGGCCCCATTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010327:ENST00000321725:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGCGCTTCTACCC
R:
CTTGACAATGGGGCCCAAAGG
Band lengths:
338-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains