GgaINT0020620 @ galGal3
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
NA
Coordinates
chr12:633970-634778:+
Coord C1 exon
chr12:633970-634195
Coord A exon
chr12:634196-634628
Coord C2 exon
chr12:634629-634778
Length
433 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
GTGGATGTCCTTGTCTGCAGCCT
3' ss Score
6.43
Exon sequences
Seq C1 exon
GGGGGAACCTGGGGCTGCCACTATTTCGAAAACCAACTGTTCAGGAACACTTTTCTGTTTCGCCATAACCACCCATTGCGGCCATCCTGGTCTTCCTCCCCGTGGGAACCTTTCAGAAGACACTTCTCTTCCAGGGGGCCTCTGAAACGAGGCTGCAGGAGGAACTGCATTTCCACCCAGTGGGTCCCCCAGTGCTGCAAGAACCACTATGGCCGCGACTGCCAGG
Seq A exon
GTAAGGCAGCGTGCATGGATCCCTGGTGGCTGCGGGGCAGGGCGGCCCAGGCAGAGAGCACCATCTGGGATGGGGATCTGTGGTGAGGTTGGAACAGGGAATTCCCTTCCCTTGGAGAAAGCCCCGGTGAGCCGTGGGCAGCTGAGGGCTGTGGTCAGTCGCATTGCTTGTCCCTCTGCAGCCAGCACACGGCCACAGATGGCTACAGGCTCTGTGCTTCCCACACAGCAGCTCCTGGCTGGCTCAGTGTGGGTAGGCAGCAGGAGCCAGCCTGGACACACACCAACCATCTTCCTCAAGCCCCATCCCAAGGTCTTGGGCTGTCCCAGGCCACTAAGCATGCCATACATGTGTGTGTCACCTCTGTGTGAGTGGCGCTGCCCCAGAGTAGGGCCCCACATCACCACAGCCTCGTGGATGTCCTTGTCTGCAG
Seq C2 exon
CCTGCCCGGGGGGGCTTGAGGCGCCGTGTGGGAACCGTGGGACCTGCGATGACAGTATCAGTGGCTCGGGGCGGTGCAACTGCAGCCAGGCCTTCATCGGGACCAGCTGTGAGCTGTGCGCACCGGGCAGATATGGGCCCCAGTGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCTGCCACTATTTCGAAA
R:
CCATATCTGCCCGGTGCG
Band lengths:
352-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]