RnoINT0144319 @ rn6
Intron Retention
Gene
ENSRNOG00000018434 | Stab1
Description
stabilin 1 [Source:RGD Symbol;Acc:2324745]
Coordinates
chr16:7223609-7224478:-
Coord C1 exon
chr16:7224280-7224478
Coord A exon
chr16:7223759-7224279
Coord C2 exon
chr16:7223609-7223758
Length
521 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ACATCTACACTATGCCCTAGCTT
3' ss Score
3.24
Exon sequences
Seq C1 exon
GGCAGCCCTGAGGCCTGCTGGCGTCACTACTCCAAGTTCTGGGCAACTCCTCTGCACTCCATAACCATGCGTGGAGGTTCCTGGATAACGCCTAGTTTTTGGAACCGCAACCACATGGGTAGGGGTTGCCACCGCAAATGTGTCACCACCGTCTGGAAGCCTAGCTGTTGCCCTGGTCACTATGGCGCTGACTGCCATG
Seq A exon
GTAAGTATCCAGAGGGTTACGGACAAGCTGACCCGTTTCTCTAGTTCCCAAGATGGCCGAAGACAAGGTCATCTCCCTTTAGAAAGGATATTGGGGGCTGGAGAGATGGCTCAGAGGTTAAGAGTACTGGCTACTCTTCCAGAGGTCCTGAGTTCAATCCCCAGCAACTCCATGGTGGCTTATAAGCATCTATAATGGGATCTGATGCCCTCTTCTGGCCTGCAGGTGTACATGCAGATAGAGCACTCACATATAAAGTAAATACATTTTTAAAAAGGATATTGGGGTGCTCTAGGGTGGGGGGAATGCATAAGAAGCCAGGTAGGAATACAGAAGATTTTGTATCTGTTTTAGAGTGCTGGAGGGTTTGGGTGTCCTCTGGGTTTGGTGTGGTCTCAGTGGTGTGGGGACACGAGAGGACTGATCGTCCTTGAAGAGTCTTGGCTGGCACTTGGTAGGGCACAGATGGCAGATGCTCTTACGAGAGTCTGGTGACATTTCACATCTACACTATGCCCTAG
Seq C2 exon
CTTGCCCCGGTGGTCCCAGAAGCCCCTGCAGTGGCCACGGTGTGTGCCTGGATGGCATAAGCGGAAGTGGGCAGTGCAATTGTCATCCGGGTTTTGCCGGGACAGCGTGTGAACTCTGTGCCCCGGGTGCCTTCGGACCCCAGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018434:ENSRNOT00000025394:55
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=86.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGCGTCACTACTCCAA
R:
TTGGCACTGGGGTCCGAA
Band lengths:
334-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]