MmuINT0153610 @ mm10
Intron Retention
Gene
ENSMUSG00000055371 | Stam2
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 [Source:MGI Symbol;Acc:MGI:1929100]
Coordinates
chr2:52709596-52715004:-
Coord C1 exon
chr2:52714818-52715004
Coord A exon
chr2:52709691-52714817
Coord C2 exon
chr2:52709596-52709690
Length
5127 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CTTTCTCATGCTGTTTTCAGTGA
3' ss Score
8.97
Exon sequences
Seq C1 exon
CTATTGAGTTATCGTTGCAAGAGCAGAAGCAGCAGTACACGGAGACAAAGGCTTTGTACCCACCCGCAGAGAGTCAGCTCAATAACAAGGCTGCACGGAGAGTCAGAGCTTTATACGACTTTGAAGCTGTTGAGGACAACGAGCTCACCTTTAAACATGGTGAGCTCATTACTGTTTTGGATGACAG
Seq A exon
GTATGCTTTACCCTTTTTGTGTATCTGTGTGTCATCGTCTGAAGATACAAAGTATGCTCAGATGAGGATAAGGAGTACGCATGCTTTTGACTTTTTGTCGGATAATACCATATTCTTTTACTGTTTTCTTGAAGATTAGACTAGGCAGTGAGACCCTTGGTCAAAGCAGTCCAAAGCCATGCTTGGGTCCTCCACAAATACTACTACACAATTCCCTCACAGTTCCTGTATCATTTACAGTTCGAAGAAACAAACTAGATTGATCTGTTTTGAGCCTAACTCTGTCTTTATTCTTTTTTTGGTTTGTTTATTTTTAGAGACAAGGCCTTTAAGGCCTTCTGTCTTAGTTTCCCAAATGCTGAGATTTCTGTATGAACTTTATCCCTACTTTTAAAAGAAGTGGATATGGTCTGTTGAGTTGGCTCAGTGGATCAGAACTCTTGCCTTTTAAGTCTGAGGACCTCCCGGTTCAGTCCTTGGAACCCACATGCTGGCAGGAGAGCACTGTCTCGTGCAACTTGTCCTCTGCCCTACAAAGACACACACACACACACACACACACACACACAGATAAATGAATGTAATACTTTTTTTAAGTTGATCAAACTTTGCAACAGTTGGACCAGACAGCTTGTTGCTATGACAAAGGTGGCGCATGTACCCGCTTTCCTATACTAGTGAAGTGAAGGTAAGTAGTTTTAATGTATTAGGTACATTTATTTATTTGTGTATACACATGCATGTATGAATGTGTACCCACATAACCACTGTGTGACGTGGAAGTCAGAGGACAATGTGCAAGAGTCAGCCTTGTACCATGTGGGTTCTGGAGGTCACACTCAAACTGTTAGGCTTCACCTTAACCAGCCGAGCCATCTTGCTGGCCCCAGTCTAGCCTATTTTTAAGTGGCTACATACATATGGTTTTGCTTTGCTGCTGTATTTATAGAGACAATGTTATGTAATAGACTATTTATAATAAAAAAATGAATGAGGACATAGTTCTGGTTTTGTGAAACTTAAGTAGGAGAGTTAAAATGACTGTGTAGACAGTGACATGCAAGGCAGAGCTTGATGATACCATGAGAGCGGCTGTCTCGGGCCCTGGAGAACCAGTTCACACTTGGCATAGACATGTGGTCTGGGAGGCTTGGCCCGGGGCTGCTTCATTTCTGATGAATCTTGATGGAGTGGTTTTTGTTCCATGCTAATGACTGAATTCAGGCCTTGTACATTCAGGGCAGTGCTTTGACTCTGAGTTATGTCCCTAACCCCTTGAGTTGACTTTGAAAAAAAAATTGTAAGAAACTGAAAGGATTCTAAGCACTGAACAGAAGGGTTGATTAAAAAGTGAGAAAGAGGCTTTAAGGAAATGACTGAGTTCGTTGCTTCTTTGCCTGTGGTAGCCATAGTTTTCTTATGGGATGTTCTTACCCATCAAGGGCATTGCTTTCCTTTTGCCACTGTCATTCCAGCAGTCATCGGGGAGCTGTTCTGGTTAGAGCTTATAGCTGAAGAGAAAGGCTCAAGTTTTCCTTGGTTCTGAGACCTAAACGCATTTATTAATGGGGAGGGCGGGCACACATGTGTGATGGCTGGAGGACAACTTGCAGTTCTTCCCTTCCACCATTGGGCCCTGGGGTCAAACTCAGGTCGTCAGACTTGGGAAGTGGTTTTAACTGAGTTCAACCCAAGACCTAAAACTAGATGGGAGAAACTGGATCTTCTTTTTTAAATCTTAAAATACAAAAGGTTGGTTTTTGTTTATTTTATTTTCTCAGTTTCCCATAAGGAATGCAGGAAAATGCCTTTTTTATTCTACCAGCCTAATTTCCTTTTCATCTTGATAAGTGAGCTTCGCTCTTCAGGAGTCACCTGAATGAGCTGCCTTTCTCTGCTGCAGCCAAGCATCCGTGTGACAGACACCAGTGAGGAGGCTGTGTTTTCACGGAGAGTCCTTGCTTATGTAGAAATTAGCATACAGAATATCTCCGGACTAGGATACATCATTCTCTGACCTTAAGAATTTAGGTGATGGAGAGCTCTTTTTTTATCTTTGTGGAGCTCACTGAATGAAATGCCTCAGAGTCACAGAGATAGCTGTATAATTAACCCTAGGAGTCTTCCTTAGTGGACAGCTCCGTGTTGAGAGTTTGAACCTAGCATGAAAACGCTTTCGATATACTTCCTAGTCCTACAGAAAAGAAAAGGAAAAGAAGAAGAAAATCAAACGCATCCTTTGAGTCAGTTTGTCACATGAGATTTCTAGGAAGTAGATAAAAGGGTTCTTCCCAGATAACTATGACTGTTCATTTGGAAAGTCCAAGAGAATCAATGATACTGGCAAACAGCTAAGTTTGAGTTGGGGTTATTAGATATAAACTCAGTGGCATGTTTAGAAGATGAGAAGTAGGAAAGATGTCATTCACAGTAGTCACGGGAACTCCTCAGCAGTTATGAGGACTCAGAGAGCCTGGACTCGGCTCACTGGATCAACGTGGTAGCACACAGCCATCTGTGACTCCAGTTCCAGAGTGTGCAGTGCCTCTTGTGACCTCCTCGGCGCCTGTGTGCATGTGGTGCATATATGCACACTTAAGCACATATACCTACATGCAAATAAAGTGCATAACGTCATCTAATAATGAATAACCTGCAAAGGTATGCAAGGCCTTCATGGAGAATCTATGAAATTCTTGGAAAGTTAAGAGATATAAGTATACATTATATTTATAAACATACAAATAGAGTGATAAACCTTAATACTGTAAAGATTTAGGTTTTCTCATATCACATAAATTAACTGCATTTCCAATTAAACTCCTTTTGAAATTTTTTTTCCCAAAGAATTTGAAAAAATTTTGGAGATGTGCTAGTGCCCAGAAAGTAAAATAACCATCCAGCATGAGGGGCGCAGACGCCAGCATGAGGGGTGCAGACTCTTCATGGATGTATTGCACATAGGATTTACTTCCTAGACAGATGACATGCTATCTAAAACTTAGGAGTTGCAGACTTCTGGAGTGTGATTGGCTGCAAGTAATAGACTCCACAGAGAACACAACTACAGCCTGGTTCCTCTAGGCTGTTGGAATAGAGTGAGACACTGAGAGGCTCAGAACAGACACAGCTTGCTATAGCAGTTAGGGGGGCAGGCATTAGGCTTGTTTTTTGTTTGTTTGTTTTTTAATTTATTTTTTACTTAATCACTTTAAATCCTGCTCACTGCCCATTTCCTGGTCACCCTCTCCCACAGTCCTTACCCCTATCCCCTCCTCCCCCCTTTTCCTCAGGGATCCCTGGGCACCGCCTCCACCCCCCCTGCACAATTAAATCAAGTCTGTGAGGCTAGGAGCATCCTTTAGTGAACTTTTAGTAATTTTTGCTGCATTGATTAGCTCTTTATATAATAAAATGAAGTTTATTTCACACAGCACGAACAGTTGGGTTCCACATGATTTAGTGACCTAAATGTGGGAGACGGACAAAAAAGAAAATCTGAATTATTAGACAAGTCTCTGGGGGGGAATAGACAGTAATTTAGGGCAGAGAAAGATAGATAAGGATATAAAGCATAGAGGAAAAACTACTGAATTGGCCTGAAAGCAAGGGTGGTCTTAGTTCAGATAGACAGTTGCCTTTCTAAGTACATAAAGAACTAAAATCAGTGAAAAAACAAATACCTGTGGTCCAGTAGGAAAAACTAACAGGCAAAGATAAGAATAAGCAGTTTGGGGCTGGAGAGATGGCTCAGTGGATAAGAGCACTGACTGCTCTTCCAGTGGTCTTGAATTCATTTCTCAGCCAACCACATGGTGGCTCACAACCATTTGTAATGGGGTCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACGATGTACTCATATAAAAATAAATAAATCTTTAAAAAAAAAGAACAAGCGGTTTACAAAGCAAGTTCCAGTGCAGCCAAAGTTACACAGAGAAACTGTCTCAAAGAAGAAAAAGAAAAGTCAGTCTGTGGAAGAGGCAGTGTAGCACTAGTGGGCCCTGGAGAGTGCGGATGAGCTTGCTGAAGCACGCCTGGCTCGCCTTCTTTCTGGCATCAGATGTTGGTATGGGCAGTTATCAAGTGTGGGGAAAATGACTGCCCCATCCTCCTTGGGGAAGAAGGAGTGTGAGCTACCAGTCTTTCTAATAAACATGTGAGCAGCAAGTAGTTTTGTCTGTGTGTCCATCCTTCCCCAGCCCCATCCCTCAGTCCTTTTCAGAGATAGTTTCATTGTTTGGCCTTTTTCTCCAGACTGGTCTTGAACCCGTGGCTGTGCAGTTCTTTCCAAGTACTAAGAACTATAGACGTGTGAACACACCTAGCCTGCAGGTCACGGCCTTGAACAACCTAGAGCAGCTGTTGCTTGTGGGCTTTCTAACCCAGAGTGGTTACTAGTCAGTCTTGTTTATTTGTTTTTTTCCCGAGACAGGGATTCTCTGTGTAGCCCTGGCTGTGCTAGAGCTCACTCTGTAGACCAGGCTGGCCCCACTCAGAGATCCACCTGCTTCTGCCTCCCAAGGGCATCTCCCACCACCTCTGTACTCTTCAGTCCTTGTAGTGTTGGGAGACTGGGAGTGACCTGGAATGAGCTGTCAGGAGTTCACCTTCACAGAAATGACTGGACTAAGTGCATAGGCACTTGGGATGGAACTTTAAAGATGAGTAGCATCATGAAACTGTACGCTCTGCCCGGGTAACACGTCTCCATACAGGTGTCAGTTCAGTTGTCCTTGTGTGAAAGGTGGCAAGGAGGCTGGGAAGGGAGCTGCTTTAGTTGGGATGGATGTAGCGTGGAAGGATGGATTTGGGCTTGGGGTTTAGTCACTGATAATTGCTTCAAAATGTAGGTATGAGGATATAGATTTTCTTTGACTATCTTTTCACTGATTTAATTATAAATATATTAATTTAAGAAAAAAGCATTTCTGGCTTTCCAGTGTTAGGATTACAGGTCTATCCCACTGTGTCTGGCCAAGGAAAACAATTCTTATGTATAGCTGGATGGGAACAACTGGGAAAGTCCAGTAGCTGTGTTCAGTTTTCTGTCGACAGGATGGAGGATAACAAATGACCTTTCTCATGCTGTTTTCAG
Seq C2 exon
TGACGCCAACTGGTGGCAAGGAGAAAATCACAGAGGAACAGGACTCTTCCCCTCCAACTTTGTAACGACTGACTTAAGCACAGAGGTTGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055371:ENSMUST00000102759:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.242
Domain overlap (PFAM):
C1:
PF0280915=UIM=PD(44.4=12.7),PF0001823=SH3_1=PU(58.7=42.9)
A:
NA
C2:
PF0001823=SH3_1=PD(39.1=54.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types