MmuINT0158282 @ mm9
Intron Retention
Gene
ENSMUSG00000001750 | Tcirg1
Description
T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 [Source:MGI Symbol;Acc:MGI:1350931]
Coordinates
chr19:3896050-3896447:-
Coord C1 exon
chr19:3896270-3896447
Coord A exon
chr19:3896193-3896269
Coord C2 exon
chr19:3896050-3896192
Length
77 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TTCCCCTTTCTCACACCCAGGGT
3' ss Score
8.95
Exon sequences
Seq C1 exon
AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG
Seq A exon
GTGAGCACCCCTGTAGTGGGCCTGGGCATGGAGGGAATGGGTGGATTTCCTCTTACCTTCCCCTTTCTCACACCCAG
Seq C2 exon
GGTGGAGTTCCAGAACAAGTTCTATTCAGGCACCGGCTACAAGCTCAGCCCCTTCACCTTCACTGTGGACAGTGACTAGCTACCCACTGCAATCCCTGCTTCTCCGAAGTGGGACAGGAATAAAGAGCTGGCTGGCCCAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001750-Tcirg1:NM_001136091:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(7.3=100)
A:
NA
C2:
PF0149614=V_ATPase_I=PD(2.6=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTTGCTGTGTTGACTGT
R:
AGGGATTGCAGTGGGTAGCTA
Band lengths:
178-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: