GgaINT0057453 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:98382-98899:+
Coord C1 exon
chr5:98382-98553
Coord A exon
chr5:98554-98650
Coord C2 exon
chr5:98651-98899
Length
97 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TTCCTTTCTTTCCTTGGCAGGGT
3' ss Score
10.35
Exon sequences
Seq C1 exon
AGCTCTCTGAGGTGCTGTGGACCATGGTGATGCACAATGGCTTTGTGGGGCTGAGCTACGTTGGTGGTGTCGTGCTGGTGCCCGTCTTCGCCGCCTTCGCCGTGCTGACCGTGGCCATCCTGCTGGTGATGGAGGGGCTCTCCGCCTTCCTGCATGCCCTTCGCCTGCACTG
Seq A exon
GTGAGCCTAGTGGATATGGAGGGGACAGAACCCCGCGCGCCCCCCCTCCCCACCCCGCCAGCCCTCACTGTGCCCTTTTCCTTTCTTTCCTTGGCAG
Seq C2 exon
GGTGGAGTTTCAGAATAAGTTTTACGTGGGTGCTGGCTACAAGCTGTGCCCCTTCACCTTCGCGCCCGATCCCTGGGAGTAACTGAACTGTGCTGCATGGACCTGGGGGGCTCCGCGTTGCTGGGACCCCCCAGTGCCATGTGGCGGGGGGTGGGTTGGCTGCATGCTCCCTGGCCCCGTCCTCTCCTTTTCCAAGCCTAGAGGTTTCTGCAGTGAATAAAGCCCCCCGGCTCCCTGTCTGTGTCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018754:ENSGALT00000029617:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(51.4=100)
A:
NA
C2:
PF0149614=V_ATPase_I=PD(18.9=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCTACGTTGGTGGTGTC
R:
GTGAAGGGGCACAGCTTGTAG
Band lengths:
179-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]