RnoINT0148871 @ rn6
Intron Retention
Gene
ENSRNOG00000017220 | Tcirg1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 [Source:RGD Symbol;Acc:735136]
Coordinates
chr1:219127602-219128139:-
Coord C1 exon
chr1:219127962-219128139
Coord A exon
chr1:219127880-219127961
Coord C2 exon
chr1:219127602-219127879
Length
82 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
GGCCCCTTTCTCACACCCAGGGT
3' ss Score
7.11
Exon sequences
Seq C1 exon
AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTAGGCATGGGCCGAGAGATTGGTGTGGCATCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCTTGCTAGTGATGGAGGGGCTCTCAGCCTTCCTACATGCCCTGCGGTTGCACTG
Seq A exon
GTGAGCACCCCACCCCCGTAATGAGCCTGGGCATGGATGGGATGGGTGGATTTCCTCTCACTGGCCCCTTTCTCACACCCAG
Seq C2 exon
GGTGGAGTTCCAGAACAAGTTCTATTCAGGGACCGGCTACAAGCTCAGCCCCTTCGCCTTCACTGTGGACAGTGACTAGCACCTACTTCGATTCCTGCTTCTTCAAAATGGGACAGGAATAAAAAGCTGGCTGGCCCAGGAACTCTGCCTTTGTCCTCTCTGGGGTACCAGGGTTAGACTGACACTTTACTGGTCACAGCTCTAGATTCTGAAGATGACATCTACTTAGACCATCCTTCAAGGGAGGTAGAGGGTAGGAGGCACTGTTTTAGGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017220:ENSRNOT00000023425:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(7.3=100)
A:
NA
C2:
PF0149614=V_ATPase_I=PD(2.6=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCAGCCTTCCTACATGC
R:
TGGGCCAGCCAGCTTTTTATT
Band lengths:
174-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]