MmuINT0162707 @ mm10
Intron Retention
Gene
ENSMUSG00000000385 | Tmprss2
Description
transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
Coordinates
chr16:97564684-97567175:-
Coord C1 exon
chr16:97567023-97567175
Coord A exon
chr16:97566152-97567022
Coord C2 exon
chr16:97564684-97566151
Length
871 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATT
5' ss Score
6.62
3' ss Seq
TCTTCTTCCTATTTGCACAGGCG
3' ss Score
8.54
Exon sequences
Seq C1 exon
GGAGACAGTGGAGGGCCGCTGGTTACTTTGAAGAATGGGATCTGGTGGCTGATTGGGGACACGAGCTGGGGCTCGGGCTGTGCCAAGGCACTCAGACCTGGAGTATACGGGAACGTGACGGTATTTACAGATTGGATCTACCAGCAAATGAGG
Seq A exon
GTAATTTCCTCTATTCCTGGGCTGTCCATGTTCTTGAGCTCAAGTCGTGGATCTGGGAGGATTGCACCTTGGCAGAAAGCAGACACTTTCATGACCCAAGCTTCTCCTGGATCCTTTCACCCCTCTGTTCCAGATCCTTTCACCCCTCTGTTCCCTATCCCTATGATTTCTCAATCCCTCTATATGCCCACTCTAGGCCTATGGTGCCTGTATATCTAGAGAGAGGCAGTGTCAACCTTACTGGCCTTCCTGCTAGCGCTGATGGCAGAGCTGGACTCATAGAATCCCCTTGGCCCCCCATTTTAGTGCAGGGTCAGCAAAGCCAGGCACCTACCCAACCTTCACCCACTCACATACTTGGGTGATAGAATAGTCAGAATGGTACTCTTCCTCAGAGGAGTCTCTTGAGGGGCATTATGTTCATGTTCAGAGGGAGAGAGGTGACTAGAGATCTCAATTCCCCAACTTGGGTCCAGGAGAGGTTGCACAGCAAGGAAGAAGCCCAGGAGTTCCTGTGAGCCTACCCTCCTGGCTTATCACTACAATCTGTTAGATCTCCAGCTCCTTCCATTCCAGGGATCAAAAAGATGGAGGGTTTCTTAGGGAAAGAGCATCTCTCCTAGTATCTGTCCGATAAAGAAAGAATGGGACTGAGGTATTGCTGTGAAGCCTGATTGTGTCAATGCAATGACACCTGGGTCCACGGTGTCACATCTTTTGAGGGAAAGTCCTCCTGGAAGAGTTGGGAATGGACAAGTCAGACTATGCTGATGGGCACAAAGAGGAGACTACAGGGAGGGGGCAGAATTGAGGGCACTGAGCTTTGTCTGTCATAGGAGAATAACCTTATCTCTTCTTCCTATTTGCACAG
Seq C2 exon
GCGAACAGCTAATCCACGTGGCTTTGTCCCAGACTTCCTTTGTCTTCAACAACCTTCTGCAAGAAAACCAAGGGCCTGAATTTTAACTTCCTGTGCACAATGTACCTTTTGAGATGATTCGAAGGGCCTTTCACTTTTATTAAACAGTGACTTGTTTGACTGTGCTCCCTGGTCCTGTGAGGGCTTCAGTGCCCCACCCCTGGGCCACTTCTGCAGCTCCCACCAGAATGGATGACCAGATTCTGTTGGGTTTGGGCACATAGGGCCAAAGGCAGAGGAGGGTGGCACTCTCATGTTGGAACTTCTTTTGGGCTCATGCTCAGGCCTTTTTTGGATCACTAAGGACTATGACCTCTGAGTAACCTGATGACCTGAGAAAGAGTAAGGAGGCCAGGCAGGGCCTTGGGCCCAGGAACAGGTACCTTGAGAGTGAGAGCTACCCATTGCCTGTGGCCTAAATCTGCTGTGCAGGTTGGGCTGGTCATACTGTCATGATTTCATTAACAGCCTGGGTGAACATGGCTGGGAGTAAAGGGCTTGCTCTCCTGCATGTTGACATGACGGCCCTTTCCAAGGGTGATGGAGGCTTTCCCAAGCTAAGGGCCTAGGCAGATCTCTCAGAGCAAGAAGCTAATGCCGGCATGTCCCTTGGGTGAGCTCTACATGGTGTTATTCAGTCTGGTTCTTGGCTCCCCACTACTGTTTCTCTCAGCCTCTCAGAGCCTGAAACTTACCTCTTAGCTTTGGCTACAGGCATGGCCTAGTACCTGATGGAGCCTGTATAGCTCAGCTAATCAAATGGAGGCTCAGGTCCATCAGAATCAGGGACTTGTGATTTCAGTCACCTTGCTTCTGGGTTGTGTTTCTTCTCTTACTACCTCACTGCACCTGGACACTAGAGTGGATGAATGTCTGGAGTTCACCTGCATTTGGACTGTGTGATTGTGCCTCAGACACTAGACCTCTTCCAGATGGTTAGGTTGTTCTGTAGACTGGCAATGAGATTAGAAGTTCCTAGCTTCAGATAAAGATGAAAGAGAGGAGATCATTGTCTTCTGTCTTCTTCTGGCCCTGGGTTTATACCAGGAAAGCCATGCCAGAATTACCAAATATGAAGTATGAATGTCTTACCCACGGTGAGGCTCTGCCTCCTTCTCTCTGCCTGGTTCTTCAGAAGGCAGTGAATGGGTCATAACTGGGACTCCATCTTTGCTGGGGAAAGTCTCCCACCTAGGGAATGGTTACCACTCCATGTAAAGAAAACTCCCTCATGCGTCCTCTGGGACCTTCTTAGATGCTGTAAGGTACCTACATACAGACTAAATGTGCAAGCACCTTGAAGTGTGAGAACCTGTCCCCTCCTTAGCTCTCCTTGTCTTTGCTGTTGGTTGGTTATTTCCTGCTTTGTGTCTGTTCTGAGCTGTGAGATTCCACTGTGAAATATATGAATAAAGTATATAATTCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000385:ENSMUST00000000395:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.7=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGGGATCTGGTGGCTGA
R:
TCATCCATTCTGGTGGGAGCT
Band lengths:
357-1228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types