MmuINT0162707 @ mm9
Intron Retention
Gene
ENSMUSG00000000385 | Tmprss2
Description
transmembrane protease, serine 2 [Source:MGI Symbol;Acc:MGI:1354381]
Coordinates
chr16:97786289-97788782:-
Coord C1 exon
chr16:97788630-97788782
Coord A exon
chr16:97787759-97788629
Coord C2 exon
chr16:97786289-97787758
Length
871 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATT
5' ss Score
6.62
3' ss Seq
TCTTCTTCCTATTTGCACAGGCG
3' ss Score
8.54
Exon sequences
Seq C1 exon
GGAGACAGTGGAGGGCCGCTGGTTACTTTGAAGAATGGGATCTGGTGGCTGATTGGGGACACGAGCTGGGGCTCGGGCTGTGCCAAGGCACTCAGACCTGGAGTATACGGGAACGTGACGGTATTTACAGATTGGATCTACCAGCAAATGAGG
Seq A exon
GTAATTTCCTCTATTCCTGGGCTGTCCATGTTCTTGAGCTCAAGTCGTGGATCTGGGAGGATTGCACCTTGGCAGAAAGCAGACACTTTCATGACCCAAGCTTCTCCTGGATCCTTTCACCCCTCTGTTCCAGATCCTTTCACCCCTCTGTTCCCTATCCCTATGATTTCTCAATCCCTCTATATGCCCACTCTAGGCCTATGGTGCCTGTATATCTAGAGAGAGGCAGTGTCAACCTTACTGGCCTTCCTGCTAGCGCTGATGGCAGAGCTGGACTCATAGAATCCCCTTGGCCCCCCATTTTAGTGCAGGGTCAGCAAAGCCAGGCACCTACCCAACCTTCACCCACTCACATACTTGGGTGATAGAATAGTCAGAATGGTACTCTTCCTCAGAGGAGTCTCTTGAGGGGCATTATGTTCATGTTCAGAGGGAGAGAGGTGACTAGAGATCTCAATTCCCCAACTTGGGTCCAGGAGAGGTTGCACAGCAAGGAAGAAGCCCAGGAGTTCCTGTGAGCCTACCCTCCTGGCTTATCACTACAATCTGTTAGATCTCCAGCTCCTTCCATTCCAGGGATCAAAAAGATGGAGGGTTTCTTAGGGAAAGAGCATCTCTCCTAGTATCTGTCCGATAAAGAAAGAATGGGACTGAGGTATTGCTGTGAAGCCTGATTGTGTCAATGCAATGACACCTGGGTCCACGGTGTCACATCTTTTGAGGGAAAGTCCTCCTGGAAGAGTTGGGAATGGACAAGTCAGACTATGCTGATGGGCACAAAGAGGAGACTACAGGGAGGGGGCAGAATTGAGGGCACTGAGCTTTGTCTGTCATAGGAGAATAACCTTATCTCTTCTTCCTATTTGCACAG
Seq C2 exon
GCGAACAGCTAATCCACGTGGCTTTGTCCCAGACTTCCTTTGTCTTCAACAACCTTCTGCAAGAAAACCAAGGGCCTGAATTTTAACTTCCTGTGCACAATGTACCTTTTGAGATGATTCGAAGGGCCTTTCACTTTTATTAAACAGTGACTTGTTTGACTGTGCTCCCTGGTCCTGTGAGGGCTTCAGTGCCCCACCCCTGGGCCACTTCTGCAGCTCCCACCAGAATGGATGACCAGATTCTGTTGGGTTTGGGCACATAGGGCCAAAGGCAGAGGAGGGTGGCACTCTCATGTTGGAACTTCTTTTGGGCTCATGCTCAGGCCTTTTTTGGATCACTAAGGACTATGACCTCTGAGTAACCTGATGACCTGAGAAAGAGTAAGGAGGCCAGGCAGGGCCTTGGGCCCAGGAACAGGTACCTTGAGAGTGAGAGCTACCCATTGCCTGTGGCCTAAATCTGCTGTGCAGGTTGGGCTGGTCATACTGTCATGATTTCATTAACAGCCTGGGTGAACATGGCTGGGAGTAAAGGGCTTGCTCTCCTGCATGTTGACATGACGGCCCTTTCCAAGGGTGATGGAGGCTTTCCCAAGCTAAGGGCCTAGGCAGATCTCTCAGAGCAAGAAGCTAATGCCGGCATGTCCCTTGGGTGAGCTCTACATGGTGTTATTCAGTCTGGTTCTTGGCTCCCCACTACTGTTTCTCTCAGCCTCTCAGAGCCTGAAACTTACCTCTTAGCTTTGGCTACAGGCATGGCCTAGTACCTGATGGAGCCTGTATAGCTCAGCTAATCAAATGGAGGCTCAGGTCCATCAGAATCAGGGACTTGTGATTTCAGTCACCTTGCTTCTGGGTTGTGTTTCTTCTCTTACTACCTCACTGCACCTGGACACTAGAGTGGATGAATGTCTGGAGTTCACCTGCATTTGGACTGTGTGATTGTGCCTCAGACACTAGACCTCTTCCAGATGGTTAGGTTGTTCTGTAGACTGGCAATGAGATTAGAAGTTCCTAGCTTCAGATAAAGATGAAAGAGAGGAGATCATTGTCTTCTGTCTTCTTCTGGCCCTGGGTTTATACCAGGAAAGCCATGCCAGAATTACCAAATATGAAGTATGAATGTCTTACCCACGGTGAGGCTCTGCCTCCTTCTCTCTGCCTGGTTCTTCAGAAGGCAGTGAATGGGTCATAACTGGGACTCCATCTTTGCTGGGGAAAGTCTCCCACCTAGGGAATGGTTACCACTCCATGTAAAGAAAACTCCCTCATGCGTCCTCTGGGACCTTCTTAGATGCTGTAAGGTACCTACATACAGACTAAATGTGCAAGCACCTTGAAGTGTGAGAACCTGTCCCCTCCTTAGCTCTCCTTGTCTTTGCTGTTGGTTGGTTATTTCCTGCTTTGTGTCTGTTCTGAGCTGTGAGATTCCACTGTGAAATATATGAATAAAGTATATAATTCTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000385-Tmprss2:NM_015775:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(19.7=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGGGATCTGGTGGCTGA
R:
TCATCCATTCTGGTGGGAGCT
Band lengths:
357-1228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: