MmuINT0162717 @ mm9
Intron Retention
Gene
ENSMUSG00000024034 | Tmprss3
Description
transmembrane protease, serine 3 [Source:MGI Symbol;Acc:MGI:2155445]
Coordinates
chr17:31320759-31321656:-
Coord C1 exon
chr17:31321514-31321656
Coord A exon
chr17:31320912-31321513
Coord C2 exon
chr17:31320759-31320911
Length
602 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TGCTTCTATTGACTCTGCAGGGA
3' ss Score
7.87
Exon sequences
Seq C1 exon
GTGACGCCTCCCCTGTCCTGAACCACGCGGCTGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGACGTGTATGGTGGTATCATCTCTCCCTCCATGCTCTGTGCAGGCTACCTGAAGGGCGGTGTGGACAGCTGCCAG
Seq A exon
GTAAAGGACTTCCAGTAGCCCTTGGGGCCTCGGCAAAAGGCCAGGGTCTAGTTTAGTGACCCAGCCCATGGGACAGGCCCCTGCCAGTTTCCCCGTGAAAAACAAATTTACATGGCACAAGGAAGAGATTTGCTTAAGATATCCCCTGGCTTTCTTGGTGGCCCAGCCTGTGTTTACCCAGGTTCCCAGTCTTTCAGGGCACACAGGATGTGGCCTCCCCTCATCTCTCCAGCCTGATTCTGAGTGGGAAAGGGGGCTATGAGCTGATGAACCCAGGCTTGCAAAATCCACAGTGAATGAGACTCAGTACTGCCGTTGGACACAGTGATTTAGATCTGGCTCAGGCAGACTCCCTCTCTTCCAGCTCAGTGGGCTACGCAGGCCACCTTTGACTTAAAAGTGTAGTGTTTGGGATCTGAAGGCAGACATAGCCAGAGGGAAGCGTTCCCATATGGTCAAGGAGCCATGTCTTGAGTCCATTCTAGAAGTATACAGGGAGAGGTGTGCACATGGTTCTCCGGTGATGTGACATGGAAAGTCTGTGCAGCCGGGACAGTATAGCTGTCCCAGCCTCTTGACCTTTGCTTCTATTGACTCTGCAG
Seq C2 exon
GGAGACAGTGGAGGACCCCTGGTGTGCCAGGAGAGGAGACTGTGGAAGTTAGTGGGTGCAACAAGTTTTGGAATCGGCTGTGCTGAAGTGAACAAGCCTGGAGTCTATACGCGAATCACCTCCTTCCTGGACTGGATTCACGAACAGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024034-Tmprss3:NM_080727:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.8=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCCTCCCCTGTCCTG
R:
CTCCAACTGTTCGTGAATCCAGT
Band lengths:
294-896
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: