DreINT0165366 @ danRer10
Intron Retention
Gene
ENSDARG00000053315 | tmprss3a
Description
transmembrane protease, serine 3a [Source:ZFIN;Acc:ZDB-GENE-070912-70]
Coordinates
chr9:19744369-19747785:-
Coord C1 exon
chr9:19747643-19747785
Coord A exon
chr9:19744522-19747642
Coord C2 exon
chr9:19744369-19744521
Length
3121 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TCCGTGTCTTGTTGAAATAGGGT
3' ss Score
8.44
Exon sequences
Seq C1 exon
GAGATGCAAGTGTGTCTCAGCACTGTGCAAGTGTCCCTCTGATCTCCAATAAGGCCTGCAGTCAGCCGGAGGTTTACCAGGGCTATCTAACAGCAGGAATGATCTGCGCTGGCTATCTGGATGGAGGAACAGACTCCTGTCAG
Seq A exon
GTACATCATCTCATCATAGACTGATATATACAGTACTGGAGTCCATACAGAAGATATTCATTGATCCGGGCTGCGTTATTTGTGCATGTAATTATATTTAAGCTCTTTATTCTGGATAAGTGTACGTTTACTGATCCATGTGTGAACAGGAACAGCAGGTTATCTCAGTAAACTTTGCATTAGCATGTATGCCAACATTGCAATATTACTGTGCAAACATACATTAAATACTACAGTTTAACTCTCACCGTCCTACAGGTGGACATTTTTCTGTATAACCTACATATTTTACACATTTTTAAAATTGTTTGTTTGTCTAAACCAGAAGTTTTCTTGATTAACTATATATAAATATATAAAACTATATATAACTATATATAAATTAACTATGTATAATATGCATATATACAGTGCATTCGGAAAGTATTTATAGCTTTTATAGCTTTATTCACTCTTTTCACTTTTTTTTGTTACAACCTTATTCCAAAATGTATTAAATTCATTTATTATTAGTTTATTATTATTATATTTGAATATGATGCCACAAGCTTGGCACACCTGTCTTTTGAATTTTTTGCCCATTTCTCTTTGCAGTACCTCTCATGCTCTAACAGGTTGGATGGAAAGTGACGGTGTACAGCCATTTTCAGATCACTACAGAGATTTTCAATATAATTTAGATCTGGGCTCTGGCTGGGCCACTCAAGGACATTTACTGAGTTGTTGTGAAGCCACTCCATTGATATTTTGGCGGTGTGCTTTGGGTCATTGTCCTGCTGGAAGAAGAACCTTCACCCAATTCTGAGGTCAAGAGCACTCTGAAGCAGGCTTTTATTCAGGATGTCTCTGTACGTTGCTGCATTCATCTTTTCCTCTATCTTGACTAGTCTTCCAGTTCCTGCTGCTGAAAAACATCCCCACAGCATGATGCTGCCACCACCATGCTTCACTGTAGGGATGGTATTTGCCTGGTGATGGACGGTGCCTAGTTTTCTCCAAACGTAACGCCTGGCATTCACTTTATATTGTTCAATTTTAGTTTCATCAGACCAGAGAATTTTGTTTCTTATGGTCTGAGAGTCCATCAAATGCCTTTTGGCAAATTCCAGGCAGGAAGTGGCTTCTGTCTGGAGCTGGAGCTCAGACAGAGTGACCATCGGGTTATTGATCACCTCCTTGTCTCAGCCCCTTCTCCCCCGATCACTCAGCATAGATGGCCAGCCAGCTCTAGGAAGAGTCCTGGTGGTTCTAAACATTTTTCTTTCACATGTGATGGAGTTCACTGTGCTCATTGGAACTTTCAGAGCAGCAGAAATTGTTCTGTAACCTTCCCCAGCCTTGTGCCTCCTGTCTCAGAGGTCTACAGACAATTCCTTTGTCTTTATGCTTGGTTTGTGCTTTGACATGCACTGTCAACCCTAGAACCTTATATAGAAAGGTGCAGCATTTTCAAACCATGTCCAATCAACTGAATTTACCACAGGTGAACTCCAATTAAGCTGCTGAAATATCTCAAGAGTGATTAGTGGAAACAGAATTTACATGAGCTCAGTTTAGAGCTTCAGGACAAAGGCTGTGAATACTTATGTACATGTGATTTTTAATTTATATATTTTTTTTTCTAAATTTGCAACTATTTCAAAAAATCTTTTTATTGTTTGTAGAATATTGAGAAAATAAATTAATTTAAACCATTTTGGAATAAGGTTGTAAAATAAACATTGGAAAACGTTTAGCACTATGAATACTTTCCGGATACACTGTAATCCAGGCTCGTGCACAGACCCTCACAGGGCCGGTGATCGAGAGAGAGAGTTGATCGCAAAGTGCAGAGCGTGGGGAGGGGTGTGTTTGGGGGGTTGGTGTGGTTGGGTGGTTGAGGCTAGGGGGGTTGGAGTGCGTTCACAAAGTGAAGAGTGGATGGGTTAGTGTTGAGGTGGGGGGGGGGGGGGGGGGTGTGTGTGCTCAGGGGCACCTCAGCCAATGAAAGCAAAGGGGCAGTGGCTCTAGCCACTGGGCCACACCCCTGTGCGCGGCCCTGCTGTAATCCCACATAAAAAAAACAGTCATTCATAGTATAGTATAGTGTGTTATGTGCCATACTAAAGTACGTGAATTACTGTGTTGTAGTAAGTCTTTAGTAATATAAACAAGTTGCCCAATATTACTTTCACTACATGTATTATACTACAATACACTACAGATTACTGTAGTAAAAATGAAAAAAAAAGGGCAACCAGCTTCAGGACATTTGTGAGTTTACTTAAATCGAGTCAAGCGCAGTACTTGCGATGAAAGTTGAGTCAACTCAAAAAAAAAGCTGTGCAGCAAATTCTGCCTTACAATTTTGAGTTGAGTCAATATATTTTTTACAGTGTAGAGCAGGGGTGGGCAAACTCGGCCCTGGAGGGCTGGTATCCTGCACAGTTTAGCTCCAACTCTAATCACACACACCTGCTTATAGATTTCTAGTGTTCTTGAAGATACTGATTAGCATGTTCAGGTGTGCTTGATTAGTGTTGCAGTTAAACTATGCAGGACAACGGCCCTCCAGGACCGAGTTTGCCCAACCCTGGTGAAGAGTGTGTATTACAGTTCATCAGTTCACTATAGTTAATACTACAGCATGCTGTGGATTTATTAACAAAGCGCTGTAAATATTATAGGTTATATGGTTCAAAAACATGATAGTTTATTTCATCTGGTAGATCTAATTAAGTAAAATAAAAAGTAAATATAATTAAACATATTTTGATTCTGAACTTAAAATATGGTGACAGTTAAGAGGATATAAATGTAAAATAAGGTTATTAAAAGTAAAAAGCATAATTACTTTACTCTGTACATTTATTTATTCATTTATTTGTATATTTAATTATTTATTCCTATGTTTCTAATTTAGTCAGCCCTGGCGTAATAGAATATGTGATCAAACTTTCCTTTCGTGGTATTGCCGTAATTAAGAGTAAGGACTTCTTTTCATTCCTCTTGGGCGGGTTTTCAGATGTCATTTGTCTGGATTATTTTCTTGGACCTGAAAACCCAGTGCGCATGTCTACATTAAACACTGTAGTTGAGTCAATTGGAGTGTCTAAAGCACATCCGTGTCTTGTTGAAATAG
Seq C2 exon
GGTGATAGCGGTGGTCCTCTGGCATGTGAGGATTCCTCCATCTGGAAATTGGTGGGGGCCACAAGCTGGGGTCAAGGTTGTGCAGAAAAGAACAAACCCGGGGTTTACACACGCATCACACAGTCCCTCACCTGGATACATCTGCAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053315:ENSDART00000157653:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.8=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]