RnoINT0153386 @ rn6
Intron Retention
Gene
ENSRNOG00000001165 | Tmprss3
Description
transmembrane serine protease 3 [Source:RGD Symbol;Acc:1310135]
Coordinates
chr20:9915280-9916188:-
Coord C1 exon
chr20:9916046-9916188
Coord A exon
chr20:9915433-9916045
Coord C2 exon
chr20:9915280-9915432
Length
613 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGACTCCTTCTGTCCTGCAGGGA
3' ss Score
10.67
Exon sequences
Seq C1 exon
GTGACGCCTCCCCTGTCCTGAACCACGCGGCCGTCCCTTTAATTTCAAACAAGATCTGCAACCACAGGGATGTGTATGGCGGTATCATTTCACCCTCCATGCTCTGTGCGGGCTATCTGAAAGGCGGTGTGGACAGCTGCCAG
Seq A exon
GTAAGTGACTTCCGGTAACCCTTGGGGCCACAGCAACAGGCAAGGGTCCAATTTAGTGACCCAGCCCATGGGACAGGCCCCTGCCAGCTTCCCCATGACGGAACAGAAAGCAAATTTACATGGCACAGGGAAGGAATTTGCTTAAGATATCCCTTGGCTTTCTTGGTGGCCCAGCCTGTGTTTACCCAGTCTTTCAGGGCACATGGGGGTGTGGCCTCTCCTCATCCCCTCTAGCCCGATTCTGAGGGTGAAAGGGGGCTGTGAGCTGGTGGGGCTGGGCTTGTAAAAGCCACGGCGAATGAGACTTAGTACTTCCTGTGGACATAGAGTTCGGTCTGGCTCACGCAGACCCCCTCTCTTCCAGCTCCATGGGCTACACAGGCCACCGTTGAATTCACAGTTTAGCGTTTGGGATCTGAAGGGAGACGTAGGTGGAGGGAAACTTTCCCACACAGTCAAGGAGCCACGTCTTGAGAGTAACAGAGACCATTCTAGAAGTATACGGGGAGAGGTGTGCACATGGTTCACCTGTAACATGACACGGAAAGTCTGTGCCGCCAGGACAGTGTAGCTGCTCCAGCCTCTTTGACCTTTGACTCCTTCTGTCCTGCAG
Seq C2 exon
GGAGACAGCGGGGGACCCCTGGTGTGCCAGGAGAGGAGACTGTGGAAGTTAGTGGGTGCGACAAGCTTTGGAATTGGCTGTGCTGAGGTGAACAAGCCTGGAGTCTACACACGAATCACCTCCTTCCTGGACTGGATTCACGAACAGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001165:ENSRNOT00000001540:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.8=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCCTCCCCTGTCCTG
R:
CTCCAACTGTTCGTGAATCCAGT
Band lengths:
294-907
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]