HsaINT0169715 @ hg38
Intron Retention
Gene
ENSG00000160183 | TMPRSS3
Description
transmembrane protease, serine 3 [Source:HGNC Symbol;Acc:HGNC:11877]
Coordinates
chr21:42375716-42376686:-
Coord C1 exon
chr21:42376541-42376686
Coord A exon
chr21:42375869-42376540
Coord C2 exon
chr21:42375716-42375868
Length
672 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
GCTTCTTTCCTGTCACCCAGGGG
3' ss Score
7.83
Exon sequences
Seq C1 exon
CAGGTGACGCCTCCCCTGTCCTGAACCACGCGGCCGTCCCTTTGATTTCCAACAAGATCTGCAACCACAGGGACGTGTACGGTGGCATCATCTCCCCCTCCATGCTCTGCGCGGGCTACCTGACGGGTGGCGTGGACAGCTGCCAG
Seq A exon
GTACGGGGCCGCAGCGGTGGGCGAGGCCGTGGCAGGGTGACCCAGCCCTTGGGACAGGTCGTTGCCAGCGTTTCCCTGTGACAGGACAAAAAGTAAATTTACAGGGCGTGGAGAAGAAATTTGCTCAAGATATCACTCCTTTTCCTGGCTGCCAGCCCTGTGTTTACCCAGTGATCTGGCTCTGCGTGGGTGCTGGGTGGTGGGAGGGGACTCATGCTGCTCCCCTCCAATTCTGACTTTGTGGGGGACCACAGGGGAGGCAGGTGGTGGGGAGGCAGGTGGCGGGGAACCAGTGAATCTGGCCCTCCGAAAGCTGCAGTGGCTGGGACTCCAGTTCTACTAGGTGGATCACAGGTCACCTGAGGGCCCTGGCCAGGTGGACCCTCCCTCTCACCAGCTGCCCTTGAGCTTCAGAGGGTCAGGGTCTGCATTCTGGAAGGGACACACAGCTGGAGGCAGCACCCCAAAGGGGCCGAGGGACATCCTCCCTTGGGGATGCTGTGTCTGGAAGGGCTGGTGGGTTCCCTTCTGTAACCTGGGTCATCCATTGGGACATCATGAAGGGGGGTCCCAACTCCATAGCAAGCAGCCTCACACGGCAGACTGTCCACAGAAAGCAATCTCGCATGGCGGTGACTGTCCCCCAATCTTTGCTTCTTTCCTGTCACCCAG
Seq C2 exon
GGGGACAGCGGGGGGCCCCTGGTGTGTCAAGAGAGGAGGCTGTGGAAGTTAGTGGGAGCGACCAGCTTTGGCATCGGCTGCGCAGAGGTGAACAAGCCTGGGGTGTACACCCGTGTCACCTCCTTCCTGGACTGGATCCACGAGCAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160183:ENST00000291532:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=88.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCCTCCCCTGTCCTG
R:
CTCCATCTGCTCGTGGATCCA
Band lengths:
294-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains