MmuINT0162723 @ mm9
Intron Retention
Gene
ENSMUSG00000024034 | Tmprss3
Description
transmembrane protease, serine 3 [Source:MGI Symbol;Acc:MGI:2155445]
Coordinates
chr17:31326084-31326661:-
Coord C1 exon
chr17:31326618-31326661
Coord A exon
chr17:31326250-31326617
Coord C2 exon
chr17:31326084-31326249
Length
368 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
AACCCCTTGTTCTTCCATAGCCT
3' ss Score
8.18
Exon sequences
Seq C1 exon
GGAAGGCTGCACCTCAGGCCACGTGGTCACCTTGAAGTGCTCAG
Seq A exon
GTAAGCGTCTGACTATGTAGGGATCCACTGATAGGGAAGACTGCATTGATAGAGTCACAGCCCCCATTGGGTACAGCTCAAGACCCCTTCTCTTGGATGCTAGTGTGGGGCTAGGCACCCGGAGTCACTGTCAGCAGGGACACTGTTGATGGGCAGGGTGACGCTGCATGCTCTTATACTAACAGCTCTTCCCACTGCCTCCCACAAACCCCACCCACCCTCAAAGCTTCTGTCTGCCTGACCCTCTCATTGCCCGAGATTTGGCAGTATTGTGAGCTCTGGGTAGGGCACAGGGATTTTGCTGGGGTGCTGACATTTCCTCCAGAAAAGGTCACAGAGTTTACCCCTAACCCCTTGTTCTTCCATAG
Seq C2 exon
CCTGTGGCACGAGAACGGGCTACAGTCCCCGAATTGTGGGTGGAAACATGTCCTCGCTCACTCAGTGGCCCTGGCAGGTCAGCCTCCAGTTCCAGGGGTACCACCTATGTGGGGGCTCCATCATCACCCCTCTGTGGATCGTCACTGCGGCACACTGTGTTTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024034-Tmprss3:NM_080727:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.0=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.0=8.9),PF0008921=Trypsin=PU(19.4=78.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAGGCCACGTGGTC
R:
ATAAACACAGTGTGCCGCAGT
Band lengths:
198-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: