MmuINT0162736 @ mm9
Intron Retention
Gene
ENSMUSG00000032091 | Tmprss4
Description
transmembrane protease, serine 4 [Source:MGI Symbol;Acc:MGI:2384877]
Coordinates
chr9:44985789-44987526:-
Coord C1 exon
chr9:44987486-44987526
Coord A exon
chr9:44985949-44987485
Coord C2 exon
chr9:44985789-44985948
Length
1537 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TTTCCCCCCATTGAGTCCAGACT
3' ss Score
0.91
Exon sequences
Seq C1 exon
ATCCTGCCTCTCAGGCTCCCTGGTTTCCTTGCGCTGCCTTG
Seq A exon
GTGAGTTCACCCTATCTCTGAGAGTCTGGGGCCTAGGCCAGCAATGGTCAGGAAGAAAGACCTTCATCCTTACTGCTCTGTCTCCTGGTCTCTAAGTCCCACTCTTTGGGGCCAACCTTAGACTTACAGATCAGTGGTTCCTTCACGTGGTTAATGCCAAGAACCCCCTTATGCCATCTGCTCTCAGTTCATGCCCTGAGTGTGTTAGATTTTCATTGCTGTACTGAAATATCTGAGGCAGGATAATGTCATAAAGAAGTTTTGCTTAGCTTACAGTTTTAGAATCTGGAGGCCTAAGACCAGAAAGCCACCTTGGTTTGGCCTCAAGTGCTGGCCTACTGTTGGGTGGTGGATCGGATGTAGGTGAAACAAGAAACCAGACAGCAGGGTGGGCTCAGTCTTGTCCTAAGTTCTCAAAGACACTCAGGGATCATAGAAAACTACTTTATCCCCCTCAGAGGGCAGCTGCTCTGATGACCTAAGGGCCATTAGGCCTCACATCTTAAAGAGCCCACCACTTTATCATCACCATACTCAGGGCTAAGCTGCCACCTTTGTGGAGGCACACTCAAACCATAACCTAACTGTTCCGGAGACTTCCGAGCAGGTCACTGGCTGGATGGAAGCTTTGATAAGGCCATGTAAAGCAGTCCATAAGACTGTAGACCCCCCCATCTTGCCAACCAAGAAACTTTGAGTGAGTGAGCACAGAGCAAGTTGAAAGCAGGGTTGGGTCAGATAGCATTTGGCAGGTACGGAACCAGGCAGGGAAGAGATGATGGGAAAGGGGCCTCTTTGGAAAGACCAGAGAGGCACAGAACATGGCAGGGATGTGGCACTGGAGGCTTTAGTTTGGGGTTTGTTTTGTCTTTAATTATGGGGCAGGTATGTGCATGTGCCTGCAGCACCTGTGGATACCAGCAGAAAGCATCAGATGCTCTGGGTGGTTAGAAGCAGTCGTGAGCTGCCTGTTGTGGGTACTGGGAACCAAACTCGAGTCTCTGAGAGAGAAGGAGGCACCCTTAGCCACTGAGCCATCTCTCCATCCCTGACACTGAAAGTTTTAACTCAAGTTCAAAGGTCAGATGTAAAAGGTAGACCAGAAGACAGGGTAACCAATGGGCAGCTCCCTTAACAGAAGGAAGAAACCCAGTTCCTAGAACGTGCGTATTCCCTGATACCAAAGTAGCTTGTGAGTATCTGTTTACTCAGTGGGGAGTTTCTAGGGACTGTCCATTTGGGCAGGGCTTTCAGAATTCATGATTCCACGCCCTGGTTTGAAGATGATAAATTCCCAGCACAATGGTCACATCCATGTTAAAAAATCTAAATTCCTAAACACACACTAGAGGTGGGTTTCAGGGGAACCTGTGGGTCGTGCTCGATATCTCCCCACGGATGATTCAGGGCTGGTGTGGGTGGATTCTCCCATCCTTCCCATACTATTTCTGAGGGCCCTGCTCCAGGGGTCTCTGGGGAAGCATCCCCTCCCCAGAAGCCTGACTCCCCCTCCTTCCTTTCCCCCCATTGAGTCCAG
Seq C2 exon
ACTGTGGAAAGAGCCTGAAGACTCCTCGTGTGGTGGGTGGGGTGGAGGCCCCTGTGGATTCTTGGCCGTGGCAGGTCAGCATCCAGTACAACAAGCAGCATGTCTGTGGTGGGAGCATCCTGGATCCCCACTGGATCCTCACAGCAGCCCACTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032091-Tmprss4:NM_145403:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.1=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.1=79.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCCTGGTTTCCTTGC
R:
CAGTGGGCTGCTGTGAGGAT
Band lengths:
182-1719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: