RnoINT0153405 @ rn6
Intron Retention
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49474769-49476514:-
Coord C1 exon
chr8:49476474-49476514
Coord A exon
chr8:49474929-49476473
Coord C2 exon
chr8:49474769-49474928
Length
1545 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
GCACCCCCGATTGAATCCAGACT
3' ss Score
0.63
Exon sequences
Seq C1 exon
ATCCTGCCTCTCAGGCTCCCTGGTTTCCCTGCGCTGCCTTG
Seq A exon
GTGAGTACACCTTATCTCTTAGAGTCTGGGCCAGCAATGGTTAGAAGAAAGGCCTACATCATCACCGCTCCGTCTCCTAGCCTCCAAGTCCCACTGTGTGGGGCCGAGCTTAGACTTACAGATCAGTGTTCCTTCAGGCGGTTAATGCCGAGAGCTCCCCTTCTGCCATCTGCCCTCAGTTCATGGTCTGAGTATATTAGATTTTATTGTTGTACTGAGATATCTGAGGCAGGATAATGTCAAAAAGAAGCCGTGCTTGGCTTACAGTTTTAGAACCTGGGGGTCTAAGACCAGAAAGCCACCTTGGGTTTGGCCTCAAGTGCTGCCCTAGTGGTAGGTGGTGGATCATGTGAAGGAGTGTGAATAATACAAGAAATTGGACAGCAGGGTGGGCTCTGTCTTGTCCTAAGTTCTCGACTCAGGGACCACAAAAAACTACTTTATTTTCCTCAAAGGGCAGCTACTCTGATGACCTAAGGGCTATTAGGCCTCACCTCTTAAAGAACCCACTGCCTCATCACCACCGTACCCGGGGCTAAGCTGCCACCTTTGGGAAAGGCACATTCAAACCATAGCCTAACTGTCCCAGAGACTCCCAAGCAGGTCACTGGCTGGAAGGAAGCTCTCTATAAAGACCGTGTGAAGCAGTTCATAAGAGTTTAGACCTCCATCTTGCCAACCAAGAAGCTTTGAGTGAGCGAGCACAGGGGAAGTGGAAAGCAGGGTTGGATCAGACAGCATTTGGCAGGCACAGGACCAGGCAGGGGAGAGATGGCGGGAAGGGGCCTTCTTGGAAAGATCGTCGTGTCAGGGAGTGTCTGAAAGACCAGAGAGGCACAGAACAGGGCAGAGAGGTGGCTCTGGAGGTTTTAGTTTTGGGTTTGTTTTGTTTTTGATTATGGGGCAGGTACATGCATGCGCCCGCAGTACCTGTGGATACCAGTAGAAAGCATGAGATCCTCTGGAGCTGGTTGACGTGAACTGCCTGTTGTGGGTACTGGGAACCAAACGCAGGTCTCTGTAAGAGAAGGAGGCACCCTTAGCCACTGAGCCATCTCTCTAACCCTGACATTGAAATGTTTAACTCAAGTTCAAAGGTCATAGGTAAAAGGTAGGTCAGAAGACAGGGTGGCCAATGGGCAGCTCCCTTAACAGAAGGAAGAAACCCAGTTCCTAGAATGTGCTTATTCCCTGATAACAAAGTCGTTTGTGAGTATCTGTTTACTCAGTGGGGAACTTCTAGGGACTTTCCCTTGAGGCAGGGCAGGGGCTTCAGAATTCATGATTCCACACCCTTGTTTGGTTTGAAGATGATAAATTCCCAGCACGATGGTCACAGCCGTGTTCAAAAATCTAAGTTCCTATCCACAAACTAGAGGTGGGTTTCAGGGAAGCCTGTGGGGTTCAGAGCTGGTGTGAGTGGGTTCTCCCATCATTCCCGTGCCATTCCTGAGGTTCCTACTTAGGGGTGCCTGGAGAGGCAGCCCCTCCCCAGAAGCCTGACTCCCCCTCCTTACCTCTCCCCGCACCCCCGATTGAATCCAG
Seq C2 exon
ACTGTGGAAAGAGCCTGAAGACTACTCGTGTGGTGGGTGGGGTGGAGGCCTCTGCGGATTCTTGGCCGTGGCAAGTCAGCATCCAGTACAACAAGCAGCATGTCTGTGGTGGGAGCATTCTGGACCACCACTGGATTCTCACAGCAGCCCACTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650:ENSRNOT00000040313:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.1=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.1=79.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTCCCTGGTTTCCCTG
R:
CAGTGGGCTGCTGTGAGAATC
Band lengths:
183-1728
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]