HsaINT0169730 @ hg38
Intron Retention
Gene
ENSG00000137648 | TMPRSS4
Description
transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:HGNC:11878]
Coordinates
chr11:118108856-118111900:+
Coord C1 exon
chr11:118108856-118108896
Coord A exon
chr11:118108897-118111740
Coord C2 exon
chr11:118111741-118111900
Length
2844 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CTGCCTCTGCCTGTGTCCAGCCT
3' ss Score
6.95
Exon sequences
Seq C1 exon
GCCCTGTCTCTCAGGCTCCCTGGTCTCCCTGCACTGTCTTG
Seq A exon
GTGAGTACCCCCAATCTCTGAGGGTTTGGGGCCTGGGCCAGCAATGAGCAGGGAGGAAGACCTTCATCTTCACTCCTAAATTTCTGGGACTCCAAGTTTCATTCTGCCTTGGTCTACAGCCCTTGGGCTTGTCGGTCAATGCCCCCTCGAGTTGTTGGTGGCCTTGGGCAGGTCACATTCTTTTTCTGGGTCTTTCCAAGCCCCAGTTTCCCCCTTCTACCATCTGTGCATGGCTCCATGACCTAAGTGGAGACCTGGGAGAGAGTGTTAGGAAGACCGAAAAGGGCAGGACGGGGCCTCCACTGCCTCCCATCCCTGGTCCGGGCCCACATAGCCTTCTTTGTCACAATCAGCTCAGGTATCCAAGATCAGATTACCCACATTCATTATTTGAGCAACTATTCATTGAACAGTTAGAATATGTCTCACTCTGTCAGTTGCTGGCTAGAAGTAGAAAGTACCAGATGAGTGAAATAATTGGCCACTATCCTTGGTAGCTGATGACTAAGTAAGAGAGAGATGCAAGACAACATGTGGAAAATGCCAAACTGAGTAGCAGTCACAGTTGACATGCTGCAGAGAGAGCTGGCCGGGGGTCAGAAGACCTGGGCACCAGTCCTGTTCATTTCCAGTGTGGCCTCGAGTCATTCACCTGACCTCCCTGAAGTTCATTTTCCCAAGAAGTTGTTTAGTCCAACTGCCCATCAAGGATCTTTAGGGACCCTTCTAGCTCTAACAGAGGAGATCAGAAAAGAAAACAAGCAATGTGGCTCAGCTCATCCTACAAGCTTCATAGAGAACTGAGACTGGCCTGGAAGCATAGCCAGAAATTAGAACGCCTAAGGGAAGAAGGTCACAACGCTGCCTCTGCAATTTAGGAGTGTATATGCTTTCCTGCAGGATGTTGAGAGTTTCATTCATTATCGTATGCCCCCTACCCCGGCCCCACAATACCTAGTGCGTGGGATCTGACACGTGGTGGCTGGTCAATGAATGAATGAATGAATGGTCACACCATCTGAGGTTCTGCACTGAGTAGCCCTGAAGGCTTGAAGCAGCATAAGTGACAGGTCCTCCCTTGAGGGGCCTCTGTTTTACCAATAAGCCAAGACCTAAGCTCAACAACACTGAAAGGGTGGCCAATACCCAGGACAGCCTGTGGGAATTCCAGAGAAAGGGAGATTCCCAGGGACTGGGGGCCCAGGCTAAACACTGAAAAATGCATCTGTAGGCTCAAGGAGGAAAAGCCCATGTCTGTCTGTCTTGCCCACCACTCTCTCCCAGCACCCAGCACTGCCCCAGGACAGAGAGCACTTGACACAAGTTGGTTAGATTAATGAATGATTTAGAGTTCAGTGGTCCCCAACCTTTTTGGCACAAGAGACTGGTTGCATGGAAGACAATTTTTCCGCAAACCAAGAGGGGGATAGAGAGCATTAGATTCTCTCTTTTTTTTTTTTTTGAGACCAAGTCTGGCTCTTGTCACTCAGCCTGGAGTAAAGTGTTGCGATCTCGGCTCACTGCAACCTCCGCCTCCTGGATTCAAGCGATTCTCCTGCCTCAGCCCCCTAAATAGCTGGGATTACAGGCACCCGTCACCAGCCCAGCTGGGACTATAGGCATGTGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGGCGTTTCACCATGTTGGCCAGGCTAGTCTCGAACTCCTGACCTCAGGTGATCTGCCCGCCTGAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCTGCCTCACCCAGCCTAAAGTCTCATAAGGAACGTACAGCATAGATCCCTCACATGTGCAGTTCACAATAAGGTTGTGCTCCTACAAGAATCTAACGCCACCTCTGATCTGACAGGAGGTGAAGCTCAGGTGGTCATGCTCGCTTGTCCCTGCCACTCACTTCCTAATGTACAGCCAGGTTCCTAACAGGCCACGAACCAGTGGGAAGGGCATCTTTTTGGATCAAAAACAGAATTACTTTTTAGAGAACTACAAGCAGATCAATTTGGCTAGACAGAGACTTTATATGAAACAGCAGGAGGCTGCTAGGAGGAGTGGAAACTCTACTTTGCCCTCAAGGGAGATCCCGAAGGGCTTTGCAGGAGCGGGCAAGGTGGCATGAAGAAAGCAGTGTTTGAAATCAGGTGGTATTTGAAAAGCCCAGCCCTTCCCCTTAGAATGGCCCTTCTACCATCTGTGCATGGCTCCACAACCGTGGTGGTGGCTGCCAGAAGAATTGGAAAGGCAGAGCATGGGTGGAGAGGGGGGACCTGAGGGCTTTACAGGAGTTCCGGGGGTGGTGAGGGTGTGAAAGCCAGGTCAGTCAGTAGGAAGACAGGATGTCAGATTGAGAGACTCCCCTGGCCGGGGAAACAGACTTGGAGAAGGGGGAGTTTTGGATGAGACAGTCCACTTCCGAGTCACAAAATAGCTTGTGGGTGTCTGTTTACTGTTACTCAGTGGGAGTGGCTGGGGACACGCCACCTGGGCAGGGCTTTCGTAATTCTGCATCACTTGTGAAGGTCACAGATTCCCAGCACAACGGACACACCCATGTTCATAGTCTGAACTCCTAAACACATCTTAAACCAAAATAAAAAAAAAAGAAAGAAAGAAAGAAAAAGGAGAGGGAGGTTTGAGGAAAGCCTATGGTCTGGGACACTCAATACCTCCCATGAATATCTCATATTGGGCTGGTCCTCTCTCCACTCTGGCCCCAGCCATAAGGGCCCTGCTTAGAGCAGATTTTGGGTGCTGAGTGGAGGCAGCCTCATCCCCAACAGCCTGACTTCCTGCCTCCTCCCTGCCTCTGCCTGTGTCCAG
Seq C2 exon
CCTGTGGGAAGAGCCTGAAGACCCCCCGTGTGGTGGGTGTGGAGGAGGCCTCTGTGGATTCTTGGCCTTGGCAGGTCAGCATCCAGTACGACAAACAGCACGTCTGTGGAGGGAGCATCCTGGACCCCCACTGGGTCCTCACGGCAGCCCACTGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137648:ENST00000534111:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(15.1=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.4=9.3),PF0008921=Trypsin=PU(19.1=79.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains