MmuINT0162739 @ mm9
Intron Retention
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:48910884-48914321:+
Coord C1 exon
chr9:48910884-48910928
Coord A exon
chr9:48910929-48914175
Coord C2 exon
chr9:48914176-48914321
Length
3247 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
GCATAGTCTTCTCTTGGCAGCCC
3' ss Score
4.98
Exon sequences
Seq C1 exon
CCCAGCAGAACTTACTGCCTTATATCAGTGCAGCTGACTCATATG
Seq A exon
GTAAGGTGACGCCCCTGCCATCCCTCCAGTCCTGCTCACCCTCTACCCTGTGGGATGCAAGGTTGTTAGAAGAGCCTCTTCTGGCAGCTCTGGGATAGGAATTGCATCCTAGCATGAGCTATGAAGCTATGAAGTTTTCTCCAGAGGATGCCTTTCTCTTGCCATCGCTACTCTGGGCTGATAAAGCAGTTTACACATGGCTGTACTGAGCAAAGCATTAAAATGGACTCCTACTTAGTATAGCAAAGAGATGTCTTTCCATCGGAGGCCTGAGTTTTCAGGCTATAGCATGAGTTTGGGCAGGTTGTATTTTGAGGCGGGGCAGTGCATGAGACAAGGTGATTAGGTGAGAGGCTGGGCTTGAAGTCTAATGTCTTGGATATTAAGACAAGAGGGAAGCCTGTGTGTGTGTAGAAAGTGCTACCTATCTTGATTCTTCTCTTCCTTTCCTTCCTTGGTTCTTTGGTTCCTTGGTTCCTTGGTTCCTTGGTTCCTTGGTTCCTTGGTTCCTTGGTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTTTCCCTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTCTTTTTCTGGAGACAGCATCTCTTATTGGTTTCTTATTGGTTTGGCTAGGCTAGCTGGCCATCAAGCCCCAGAGATCTAGAATTAATATCAAGTGCTACCAGGCCCTGGGTTTACATAGGTTCTACAGATAGAATTTAAGCTCTCATGATTTCATGGAAGCCCTTTACGGAACTATCTTTTTATGGAGCTGTTTTCTGGACCTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTCTCCTTTTCTTTTTCCCTCCCTCCCTTCCTTTCTTTCCTTCTTTTTTAAAGATTTATTTATTTGTGTGTATGAGTGCTCTATTTGCATGCATGCCTACATGACAAAAGAGGGCATCAGACCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGAAATTGAACTCAGGACCTTTGAATGAGCAGCCAGTTACACTTAACCTCTGAGGCATCTCTCCAACCCCAAATTATTTTTAAGTTTTTGTTTGTTTGTTTGTTTCTTCATTTTTTTTTTCATTTTTTTGGTTTTTGGCTTTTCGAGACAGGGTTTCTTTGTGTAGCCATAGCCTTCCTGTAAGTCACTCTGTAGATCAGGCTAGCCTCAAACTCAGAGATCTGCTTGCCCCTGCCTCTCTGTCTTCTTTTCTTCCTCTTCCTCCTCCCCCTCCTTCTTCTTTTTAAATTAGGCTTTGTTGTTGTTGTTGTTGCCAAGGCTGTCCTTGTGGATCTCCTCTTCCACCTCCAGAGTGTTGTGATTTCAGGCATCTTCCATTACATCCAGCTAGAATCTAGTTTTGAGATGCTATATTTATTCTATTGGATTACAAATTCATTGAGGAAGTATTTACAGCCTATATGCATTTCTTATTGATATTATTATAATTAACATGTAGCTTGTGTTTTATCCATAAAGCCCTTATTTTCCTCTATTCCTTCTTGTCTTCACCCCTCCTCCCTCCCTCCCTCCTTCCTATTCCCCTCCCTGTCCCTCTCTTCCTTTCTTCTTTCTCCTTCCTTACTTCCATGCCTTTTTGTGCCAGTCCTTGGTATGTGTATATATATATATACCAGTGCAGAAAGAAAGAGAAAGAAGTGAGGCCCATATAAGTGAATAATAAGTTTTCTTTAGTTAAGGACAGTCCCTGTAGAAATGACTGAAGTGTCAGAGGGAGGCTGTGAGGCAGAGGCATCAGACACAAAACCTGTGTAATGAGAGTGCCTGGAGGTGCCAAAGAATGGCATAGTACTATGGAGAGGGCTGGTGCTGGCAGCAAGAATGGAGAGATGTGGAAGGGCAAGATCTCAAAAGCCTTGGAGCGCTGACGTGAGGCTTAGCTTTATGCTGAGGCTGCAGAGATTCACTGGATACTTTGAAGATTGGACCACCATCTTCATAATCGCATCTTAGAAAGATTACGCAGGCTTTACAACATGGAGACTATGGGCCAGGCCAGTGACCTAATCCTTTCCTGAGGATTGGGTTGACCACCCTATACCATCTACAACTAGTAGACACTAGGATGGGAGTTTAATCACTGGGAGGCAGGAGTTATCACTCTTATTTTATGGATGATAAATGATTAAAGTTTGGAGTGGTTGTCTGAGTTATTTAAGTTCACAGGATAGATGAAGACCTAGTTATGAACATTTCAGTGTTTGCAGTTATGCTATTTCATTGCTCATCATGGGTCAGGATCTTCTGGTGTGCATGTGAACTATCGTGCTCCTTTCTTTCTTAACCACCCCATCTTTGCTTCATCAATATCTTTTGCCCAGACCACACAATGCCTGACAGAAATAAACCAATGCAAGCCACACTCACTGAAGAGGACCCTGCTTTAGAGACTGTCCCCTCTAGAAGCCTTCCTTGATTGTCTTGGAGAAAAACCACCTCAATCTTTTGAATGCCATTGGTGCTTTTACTTGAACTCTTTGTGGTAATTTGACGTGTACCGTGACTTGTGTTTGGGAAAAGAATGAGAATTCTTTGAGGAATGATGGTTGATACTGAATTACTTAGCAAATCTTCTATGGTGGCTTATGAACTTTGGCCAAATACTTTTGGGGAATGATTGATGTGCGTGTGTGTGTGCATGTGTGTGTATATCCATCCTCTTCTTCTGAGACAGGAAGGAATGGAGGTATCTAGAGCAGGACATTGGCATGCCTCAGGGGGTGACCTTTTGGATGCTCACAGGAGCCAAGAAGAGAGCATGGTTAATGGAGAACATGAGCTCTGCAGTGGAGCAATCTGGATTCCAGTTTTCTCCTGGCTGTTGCAGCTGGATGAGAGCGAAGTGAATGGGTTAGGGGTTAGGAGAGCAGAAAGGGCCTGGACAGGCATCTCCAAGCTAAATAGAGACTTAGAGATAACCTTGGGGGCAGGGCTGAGATTAGACATGGGAATTTGGTGAGAGCATAGTCTTCTCTTGGCAG
Seq C2 exon
CCCTGGTGTGGGGCTGCTGGATCTTCAACCACTATTTCTCCAGAGTCCAACACTGGATGACCAAAGCCCAATGGAGATTCGGTGCACGGAAGAGGGTGCTGGGCCTGGGATCTTCAGAATGGAGTTGGGAGACCAGAGGCAATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268-Tmprss5:NM_030709:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.201
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: