HsaINT0169734 @ hg38
Intron Retention
Gene
ENSG00000166682 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr11:113700066-113706373:-
Coord C1 exon
chr11:113706222-113706373
Coord A exon
chr11:113700169-113706221
Coord C2 exon
chr11:113700066-113700168
Length
6053 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TCTGGCCCTTATTTCCCCAGAGC
3' ss Score
9.89
Exon sequences
Seq C1 exon
GGGATACAGGGAGGGGCCATGTGCGAACCAGGGAGACCTCATCTTCCAACCAAGCTTGCTGGGCTAGCTTTAATCAATGCTGGCCTGAGAACAGGAGCGGAACATTGCCTAGTAGACCCTGAGGCTTTACAACAGTGCCACTGACCCCTATG
Seq A exon
GTAAGGTTACGTCTCTGTGCCATCCCTGCTGTGGCCTCTCTCTCTTTCTTTCTCTCTCCCTCCTCTGCCCTTGGGATTCTAGGCTGGTGGAAAGAGCCTCCTGAGGCAGCTCTGGTACAGGGGCTGGATCCTAGCAGGGGCCCTGTGTGGCCAATTTCCTGTTTCCTCCCCAGGGACTGCCCTTTATTATCCTCTTTCATCCCTCTTAGATCTATCAAGTGCTTTGCACATATGTGGTGCTCAACAAATCGTTATTACGTTGAACTTCCACTCAAAAAGAGGAGCAAGGAGTCCTGTAATTTTAAAGGCCATTTTTTTTTCTAGGCTAGCACATGAGCTTGGGCAGTTGAATTTTGAGGTGGAGCAGTACATGAGGTGAGGCCAGTTTATTCAGAGGCTGGGTTTAAAGCCAAGCTTCCTTGGTACTGAGGCAGAAGAAAAGACTGGCCATGCCCTGGAATTCTCTCTAGATCAGGCCTGCCTCTCCACTCAGAGGGACATCAGCTCAAGAGCAATCACACAACCCCAGAGAAGAAATCCAAACCTCACCTTCTGTTGCTGCTTCTCTACTATCTTATGGGTGCTTGACTGGCTCTCCCAAGCCTGCTGTCCTGCAGCCTCACTGCCTGTGTCCTGTGAGTCTCATCTGTAGGCACAAGAAAGAATGTGTGTGGTTTGATACAAACCATGACCTCTGTTTCTCCTGGAAAAGCAAGGCCTGCAGCTCTTGGGAGGTCCAGTCCTATAGGTCCTGGGCTGTGGCTGGTGTAGGGAATAGGGAGGTGGGGCTGGTACCTCTTTCTATAGGCAAGATGTTGGGGCTGCTGCGCTGTCTGTGAGCTGAACTGGCATGGGTGCTCTGGGTCCAGTGGAATGATTTTCGGGGCAATTTGGAGGTGACTGACCTAGGTGAGTCTGACAAAGTCTTTCCTTCCTCCTGCTGGAGGGTTAGGAAGACAGTTCAGTGGAGTACGAAGGCATGACTGGGGAGGTTTTGGCGTGAAAAGAACATTTCATGTGACACATGAAAATCACATTTAAGCCAATACTGTCCTGGAGTCAGCATTTCAGGCTTTTATCCTCATTGGGTACAACCCTATGTGTTGACAGGGAAAGATGCAGGGGAGACAGTAGTCTGCAGGGGAAACGGGAGTTGCTTCAGTTTTGAGAGATCTTATCTACCCTACTGGATTATAAATTTTGGGGGGAAGGATCCACAGCTTAGGTGTAGTTCTTATTAATATTATTATACTTAACATTTGTATTGGGCTTTACAATTTTTAAAGTCATTTTAATTCACATTATCTTATTTGTACCTCCCCCTCTGTCTCTCCCTCCCCCCTCCCTTCTTTCCTTCCCTCCTTTAATGTACTTTAACTGAATTCCCACTTTGTGCCAGGCTCTGTGCTTAGCCCTGGGATGCAAAAACCAGTGAGAAAGGAGAGAGAAGGAAGTAAATGAGCACAATATAGGGCCCAACAGGTGCTGTATGCATAGAAGGAAGCTTCCTGGAGAAGTGATGTCTGTGCTGAGTCTCGAAGGGTCAGTTGGAGTCAGTTACATGGGAAAGGGGAGAGCAGATGCAAAGTCTCTCTGTTGTGAGAGTGCCTGAAGGCACTGAAGTATGGCACGTATGTCAGTGTGATCCCAAATTTTGCTGTGGAGGGAGCAAGTGCTGGCAGTGAGGATGGAGAGGTGAGGCCAGGCGAGATCATGGAGGACTTTGTGAGCGATGCCATGGAGCTCCTGTTTGATCCTGAAGGCCACAAAGACTCATGGGGTAGAGATGGGGCTCACATGCTCATATTTGCATTTTAGAAAGATTACTCTGACTTTATGGCATGGAGAATAACAGAGAGAGACAAGATACTCGAGGAGGGAGATTATTCCTTGGAAAGCAGGAGTTATTACTCTTATTTTACAAATGAGAAAATTGAAATTTGAAGAGATGGCCTGAGTTGTCCAAGTTCACATAGTAGGTTGCAGACTTAGCTTTGAACTGTCTGGTGTTTTTTTTAAGATCTTATTTTCATTACTCCTCTTCATGGCTCATGAGCTGCAGACACACATATGACATACTCTGCTCTATGCTTTCTTATCCCTTTGCCTTTGCTGATTCAATCCTCTTTGTCTGGACTGCCCAATGCCCATTATATCAGCTCAAACCCTCTTCATCCCTGTGGGCCTGTCTCAGAGGCTGCTTTTTCTAGGAAGCCTTCTGTGATCACCTCAATGAGAAGTAAGCCCTTATTCTTTTGAATGATGATGGTAGTGTATTAGTCTGTTCTCACACTGCTATGAAGAACTGCCTGAGACTGGGTAATTTATAAAGGAAAGAGATTTAATTGACTCATAGTTCTGCATGGCTGGGGAAGCCTCAGGAAACTTATGATCATGGTGGAAGGGGAAGCAAACACACTCTTCTTCACATGCTGGCAGGAGAAAGAAGTGCAGAGTAAAGGGGGAAATCCCCTTATAAAACCATCAGATCTTGTGAGAACTCACTCACTATCATGAGAATAGCATAGGGGAACTGCCCCCATGATCCAATCACCTACTATGAGGTCCCTCCCCCAGTGCGTGGTAATTACAATTCAAAATTACAATTCAAAATGAGATTGTGGGTGAGGGGAGAGCCAAATCATATCATTCTATCCTGGTCCCTTCCAAATCTCATGTCCTCATTTCAAAACACAATCATGCCTTTCCAACAGTCCCCCAAAGTCTTAACTCGTTCCAGCATTAACCCAAAAGTCCAAGTCCAAAGTCTCATTTGAGACAAGGCAAGTCTCTTCTGCCTATGAGCCTGTAAAATCAAAAGCAAGTTAGTTACTTCCTAGATACAATGGGATACAGGCATTGGGTAAATACACCTATTCCAAATGGGAGAAATTGGTCAAAATAAAGAGGTTACAGTCCCCATGCAAGTCTGAAATCCAATAGGGCAGTCGTTAAACCTTAAAGTTCCAAAATGATCTCCTTTGACTACATGCCTTATATCCAGGTCACGCTGATGCAAGAGGTGGGCTTCCATGGCCTTGGGCAGCTCTGCCCTTGTGGCTTTGCAGGGCACAGCCCCACTTCTGGCTGTTTTCATGGGCTGCAGCTTTTCCAGGCTCACAGTGCAAGCTGTTGGTGGATCTACCATTCTGGGGTCTGGAGGATGGTGGCCTTCTTTTCACAGCTCCACTAGGCAGTGCCCCAGTGGGAACTCTGTGTGGGGGCTCCAACCCTACATTTCCCTTCCATACTGCCCTATCAGAGGATCTCCATGAGGGCTCCATCCCTGTAGCAAACATCTGCAAGGGCATCCAGGTGTTTCCATACATCCTCTGAAATCTAGGTGGAGGTTTTCAAACCTCAGTTATTGACTTCTGTGCACCCGCAGGCTCAACACCACAAGGAGGCTGCCAAGGCTTGGGCTTGCACCCTCTGAAGCAATGATCTGAGCTGTACCTTGTCCCCTTTTAGCCATGGCTGGAGCTGATGCAGCTGGGACACACAGTACCATGTCTCAGGCTGCACAGAACAGGGGGTCCTGGCCTGGCCCACAAAACCATTTTTCTCTCCTGGGCCTCTGGTCTGGTAATGGAAGGGACTGCTCTGCGGGTCTCTGACATGCCCTGGAGATATTTTCCCCATTGTCTTGGTGATTAACATTTAGCTCTTCATTACTTATGCAAATTTCTGCAGCAGGCTGGAATTTCTCCTCAGAAAATGGGTTTTCTTTTCTATCACATCATCAGGCTACAAATTTTCCAACCTTTTATGCTCTCTTTCCTCTTGAACACTTTGCTGCTTAGAAATTTCTTCTGCCAGATACCCTAAATCATCTCTCTCAAGTCCAAAGAGCCACAGATCTCATGACAGTGTGATCTAGAACCAGAAATACCATTTGACCCAGCAATCCCATTACTGTGTATATACTGAAAGGATTATAAATCATCTTACTGTAAAGACACATGCACACATATGTTTATTGCAGCATTATTTACAATAGCAAAGACTTGGAACCAACTCAAATGCCCATCAATGATAGACTGGATAAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAGAATGAGATAATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATTCTCAGCAGACTAACACAGAAACACCACATGTTCTCACTCATAATGGGAGTTGAACAGTGAGAATACATGGACATGGGGAGGGGAACAACACACCCCGGGGCCTGACTGGGGGTGGGGGACAAGGGGAGGGAGAGCATTAGGACAAATACCGAATGCATACAGGGCTTAAAACCTAGATGACGGGTTGATGGGTGCAGCAAACCACCACGGCACATGTATACCTATGTAACAAACCTGCAAGTTCTGTGCATGTATCCTGGAAGTTAAAGTAAAATAAAAAAATTAAAAAAAAAAGAAAGACTATATGTCACATGGTTTCATTTATATGAAACTATAAAAAAGGGAACTCTAATATACAGTGAGAGAAACAGATCAGTGATTTTCCAGGGCTGTGAGTTGGGGAGGAGTTAACTGCAAAAAGGCAGAAGGAAAATTTCTGGGGTGACCTTCATGTCCTATATTTTGACTGTGTTGGTCATGTGGGTGTACACATTTGTCAAAGTTTTGATCTGAGAACTTAAAATGTATGTAATATTTTGAGTGTGCATTATGCCTCAATAAAGTTGAACAAAACACCCCCCCCCGCCAAAAAAAAACCACCAAAGTTCCACAGATCTCTAGGGCAGGGGCAAAATGCTTCACTTTTTTGCTAAAGCATAGCAAGAGTCACCTTTCCTTCAGTTTCCAAGACGTTCCTCATCTCCATCTGAGACCACCTCAGCCTGGACTTCATTGTCCATATCACTATCAGTATTTTGGTCAAAACCATTTAACAAGTCTCTAGGAAGTTCTAAACTTTCCCACATCTTCCTGTCTTCTTCTGAACCCTCCAAACTATTCCAACCTCTACCTGTTACCCAATTCCAAAGTCACTTCCACATATTTAGGTATCTTTACAGCAGCACCAATTTACTGTATTAGTTTGTTCTCACACTGCTATAAAGAATTACTGGAGACTGAGTAATTTATAAAGCAAAGAGGTTTAATTGACTCACAGTTCCTCATGGCTGGGAGGCCTCAGGAAACTTACAATCATGGCAGAAGGGGAAGCAAACATGTCCTTCTTCAACTGGTGGCAGGAGAGAGAAGTGCAGAGTGGAGAGGGAAAAAGCCCCATATAAAACCATCAGATCTTGTGAGAACTCACTCACTATCATGAGAACAACATTTGGGAACCAGCCCCATGATTTAATCACCTCCCACAAGGTCCCTACCCGAACATATGGGGATTACAATTTGGATTACAATTCAAGATGAGATTTTGGGTGGGGACACAGCTAAACCATATCAGGTAGTTTAGCTGAACTTTCCTTCTGTCACTTAACATATAGTGCTTTACATGACTTATCTTCAGGACCAGACTACAGGTTCTTTGACACAGTCAGAGTGGGGAGTGGTCCACGTTGGTTTATTCTGAACTCCCTATAGTGTCCCCTATAGTGACCTGTGCACTTGGACCAAATATCTATGGAATGAATGAATGGGTGGATGGGTGGGTGCATGGTGGAGGGGCACTTCTTCCTCTGAGATAGGAGGGAATGAAGAAGGGTGGGATCTTGAAGCTGAAGGAGTGTGTTGAGGGACTTTAGTAGATGCCTTCAATGTTTATGGAAGATGAAGGAGTGGCTAGGAGTGCAGGCTTTGGAGTGGGCCAAATCTGCATTCAAGTGTTTGCTACTGGCCATGTGAGAGTAAGGTCATTGGGGTTAGGGGCCCCAGGAGGGCACAGGGGAGCCTGGCAAGGTATTTGTGGGAATATACAGGGAGTCTCCAAGATGAGTAGAGGTTTACAAGTGGCAATGGAATCATGGCTGGGGTTAAAGAATGGGGACTTGGACTGGGCTGTGACTTCTCTCAGCAGTCCTTGATGTGGGGATCCTGGGTGTCTGGCCCTTATTTCCCCAG
Seq C2 exon
AGCCTGATGCTGGATGACCAACCCCCTATGGAGGCCCAGTATGCAGAGGAGGGCCCAGGACCTGGGATCTTCAGAGCAGAGCCTGGAGACCAGCAGCATCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166682:ENST00000299882:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.719
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains