RnoINT0153408 @ rn6
Intron Retention
Gene
ENSRNOG00000008058 | Tmprss5
Description
transmembrane serine protease 5 [Source:RGD Symbol;Acc:628625]
Coordinates
chr8:53411316-53417377:+
Coord C1 exon
chr8:53411316-53411388
Coord A exon
chr8:53411389-53417274
Coord C2 exon
chr8:53417275-53417377
Length
5886 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
TCTAACCCTTATTTCTCCAGAGT
3' ss Score
7.73
Exon sequences
Seq C1 exon
CTGACATGAGGACAGGAGCCACACCCTGCCCAGCAGACCTTACTGCCTTACATCAGTGCAACTGACTCACCTG
Seq A exon
GTAAGGCTGTACCCCTGCCATCCCTCCATCCCTGCTCACCCTCTACTCCAGGATGCAAGGTTGTTAGAAGAGCCTCTACTGGCCGCTCCAGGGCAGGAATTGTATCCTGTCATGGGCTGTGGAGCTAGAGTTATCTCCGAGACTGCCTTTCTTTTGCCATCCCTATGCTGGGCTGATAAGTAGTTTGCATGTGGCTGTACTGAGCAAAGCATTAAACAGACTCCTGCTCAGTACAGCAAAGAGGTGTCTTTCTACTGGAGGCTCATGTTTTCAGGCTATAGCATGAGTTTGGGCAGGTTACATTTTGAGGTGAGGTGGTGCCTGAGACAAGGTGATTACTTGAGAGACCAGGCTTGAAGTCTAGTGTCTCAGGCATTAAGAGGAAAGTCTGGGTGGGGTGTGCTGGGGAATTGTTTCTATAATGGGCTCTCTGATTGGACAGGGCATCCACTCAAGAGGAACTACATCCTCAGAGAAAACCACACATACCTATGGCCCGCTCTCCTTGGCTCTCATCTCTGGGCACAGATGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACACACTGGGAACTATGTTTTTCCAGAAGTATGGCCAGCCCCCTGTGGGAGGCCCAGTCCTACTTTGGCTGTGAATGGTGTGGGGGTGGTGGGATGGTGTCTCACTTTATAGGAAGGGTTAGGGTTGCTGCCTTCTGTGCAATCTAAACTGGCCTGGGGCTCATTGGTAGGCTAGTGAATCCACTTTCGGACGGTTTAGGGGGCTGTACTGGATGAGGTTGACAGGTTTTCCTTACCCTAGATGAATGGCGAAGAAAGCCAGTTTAGCAGGCCACAGAATCAAGACCCTGGAGATATTCCACTGAATGCCTGAAAATCACACCTAAGATAACATCGCTTTGGGGTCAGTGGTTTAGGCTTTGCCATTGCTTGGGATAATCCAATGTGTCAAGACAGAAGGTGATTTAGAGAAGGAATCAAGACATTTTGGGGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCACACATGCACACATGCACATACACGCATGTGCATACACAAGTATATTTCATAGGACAACTCTAGGTGTCATTCTTCATATGCTACCTGTCATGATCCTTTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTTTTGAGAAAGCATCTCTTACTGGCTTGCATCAAGCCCCAGAGATCTAAAATCATGTTCTACCAGGCCATGGGTTTACATAGGATCTAGGAATAGACTATAAGGTTTTGTGATTTTATGGAAGCCCTTTACTGACCAAACTGTCTTCCTTCTTTCTTTTCTCCCTTCCTCCATTCCTCCCTTCTTTCCTCCTTTCCTCCCTTCCTTCCTCCCTTCTTTCCTTCTTTCTTTCATCCCTTTTTCCTTCCTTCCTTTCTTAAAGATTTATTTATTTATGTACATGAATACTCCATTCACACGTATGCCTACACGACAAAAGAGGGTATCAGATGGTCATGAGCCACCATGTGGTGGCTGGGAATTGAACTCAGGGCTTCTGAATGAGCAGCCAGTTCACTTAACCCCTGAGGTATCTCTCCAGTCCCAATTTCTTTTTTTTCTTTTTTCTTTTTTTTTTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCACCACTGAGCTAAATCCACAACCCATCCCAATTTATTTTAAGTCCTATTTTGTTTGTTTGCTTTTTTCATTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTGGAACTCCCTCTGTAGACCAGACTGGCCTCAAACTCAGAGAGATCTGCCTGCCTTTGCCTCAGGCTTTTGTTGCTGTTGCCAAAGCTGGCCTTGTGGGTCTTCTGTTTCACCTCCAGACTGTTATGGTTTCAGGCATATCCCATCACACCTAGCTAGAGTCTAGTTTTGAGATGTTATATTCATTCTTTTTTTTAAAAGTCAGGTATAGTAGTCCACACCTGTAATCTTTTGTTAAAAAGATTATGTAATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGCACATTGTCACTGACATGCTAGAAGAGGCATTGGATCCCATTGCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGCAAGTACTCTTTTTTTTTTTTTTTTTTTTATTAACTTGAGTATTTCTTATTTACATTTCGAGTGTTATTCCCTTTCCTGGTTTCCAGGCAAACATCCCCCTAATCCCTCCCCCTCCCCTTCTCTATGGGTGTTCCCCTCCCCATCCTCCCTCCATTGCCGCCCTCCCCCCAACAATCTAGTTCACTGGGGGTTCAGTCTTAGCAGGACCCAGGGCTTCCACTGGTGCTCTTACTAGGATATTCATTGCTACCTATGAGGTCAGAGTCCAGGGTCAGTCCATGTATAGTCTTTAGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGCTTGGCATTGTTGTTCATAAGGGGTCTCGAGCCCCTTCAAGCTCTTCCAGTTCTTTCTCTGATTCCTTCAACGGGGGTCCTATTCTCAGTTCAGTGGTTTGCTGCTGGCATTCGCCTCTGTATTTGCTGTATTCTGGCTGTGTCTCTCAGGAGCGATCTACATCCGGCTCCTGTCGGTCTGCACTTCTTTGCTTCATCCATCTTGTCTAATTGGGTGGCTGTATATGTATGGGCTACATGTGGAGCAGGCTCTGAATGGGTGTTCCTTCAGTCTCTGTTTTAATCTTTGCCTCTCTCTTCCCTGCCAAGGGTATTCTTGTTCCCCTTTTAAAGAAGGAGTGAAGCATTCACATTTTGATCATCCGTCTTGAGTTTCATTTGTTCTAGGGATCTAGGGTAATTCAAGCATTTGGGCTAATAGCCACTTATCAATGAGTGCATACCATGTGTGTTTTTCTGTGATTGGGTTACCTCACTCAGGATGATATTTTCCAATTCCAACCATTTGCCTACGAATTTCATAAAGTCATTGTTTTTGATAGCTGAGTAATATTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCAATGAACATAGTGGAGCATGTGTCTTTTTTATATGTTGGGGCATCTTTTGGGTATATGCCCAAGAGAGGTATAGCTGGATCCTCAGGCAGTTCAATGTCTAATTTTCTGAGGAACCTCCAGACTGATTTCCAGAATGGTTGTACCAGTCTGCAATTCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCGCATCCTCGCTAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTCACTGGTGTGAGGTGAAATCTCAGGGTTGTTTTGATTTGCATTTCCCTTATGACTAAAGATGTTGAACATTTCTTTAGGTGTTTCTCAGCCATTCGGCATTCCTCAGCTGTGAATTGTTTGTTTAGCTCTGAACCCCATTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGTCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCTGAACCCCATTTTTTAATAGGGATATTTGTCTCCCTGTGGTCTAACTTCTTGAGTTCTTTGTATATTTTGGATATAAGGCCTCTATCTGTTGTAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGTCATTTTGTCCTAACCACAGTGTCCTTTGCCTTACAGAAGCTTTGCAGTTTTATGAGATCCCATTTGTCGATTCTTGATCTTAGAGCATAAGCCATTGGTGTTTTGTTCAGGAAATTTTTTCCAGTGCCCATGTGTTCCAGATGCTTCCCTAGTTTTTCTTCTATTAGTTTGAGTATATCTGGTTTGATGTGGAGGTCCTTGATCCACTTGGGCTTAAGCTTTGTACAGGGTGATAAGCATGGATCGATCTGCATTCTTCTACATGTTGACCTCCAGTTGAACCAGCACCATTTGCTGAAAACAGCATGTACTCTTAACCACTGAGCCATCTCTCCAGCCCCATTATATTTATTCTATCAGATTACAAATTCCTTGAAGAAGGATTTATGGCCTACATGTATTTCTTATTGAAATTGTGTTTTATAATTTATAAAGTCCCTTGGACCACATTGTTTTCCTCCCTTCTTTTCTTCATCCCTTCTCCCTCTCTACCTCCTTCCTCACTCCCCCTTCCCCTCCCTTTCTTCTTTTTTCCTCCTTCCATGCCTTTTTGTGCCAGTCCTCGGTATATATAGACCAGTGCAGAAAGAAAGAGAAAGAAGTGAGGCCCACATAAGTCAATAAGTTTTCTTTAATTAAGGACATCCTCTGAAGAAATGACCTCCACACTGAAGGGTCAGTAGGAGGCAGCTATGTGGGGCAGGTGCAGCAGACACAAAACCTGTGTAGTGTGAGAGCGCCTGAAGGTGCTGAGGGATGGCACAGTGCTGTGGAGAGAGCTGGTGCTTGCACAAGGAGGGAGAGATGAGGTAGGGTAAGATCCCGAAAGCCTAGGAGCTCTGATGTGAGGCTTAGCTAGATGCTAAGGCAGCAAAGATTCACTGGGACCCTTAAAGACTGGACCACCATCGTCACATCTTAGAAAGATTACTTGGGCTTTATAACATGGAGAGTATTGGCCAGGACAGTAACCTAATCCCTTCCTGAGGGTTGGGCTGATGACCCTTTACCAACTATAACTAGAGGAGACTAGGGTGGGAGTTATTGCTCTTACTTTAAGAATGATAGGTGAATTGAAGTTTGGAGTGGTGGTCTGAGTTACTTAACTTCACAGGATAGATTGTAAGACCTAGTTATGAACTTTTCAGTGCTTGTAATTATATTATTTCATTGCTCATCATGGGTCAGGAGCTCCCGGTGGCGTACATGTGAACTCTCCTCGTTTCTTTCTTTTTTTTTTTTCTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTCGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCACTCCTCGTTTCTTTCTTAACCACCTCATCTTTGCTTCATCAACATCTTTTGACCATACAATACCTGACAAAAATACATCAACTCAAGCTCCACTCACCCAAGAGGATACTGCCTTAGGGACTCTCCCCTCTAGAAGCTGTCCCTGATCTTGTTGGAGAAAAATGCCTCTTGAAAGCCATTGGTGCTTCAGTTGAACTCTTTGTGGTCATTTAACGAATACTATGAGTTGTGTTTGGGACAAGACTGAGAATTCTTTGAGGAATTCTAGTTCATGATGGTTTATCCTGAATTACTTATCCTGGCTTCTATGGTGGTTTATGTAGTGTGTGTCTGTATCCATCCTCTTTTTCTGAGATAGGAAGGAATGGAGGTGCCTAGAGTGAGACATTGGCGGGCCTCAGGGGGTGAGCTTTTGGATGCTCACAGGAGGCAGGAAGAGAGTATGGTTAATAGAGAGCATGGGCTCTGCAGTAGAGCAGGTCTGGGTTCTAGTTTTCTCCTTGCTATTGCAGCCATGGGAGAGTGAAGTGGATAGGGTTAGGGGTTCCAGGAGAGCAGAAAAGGCCTGGATAGGCATCTCCAAGGTAAATATAGACTTACAGATAGCTTTGGGGGCAGGGCTGAGATAGGCACTGGAATTTGGTGAGAGCTTGGTCTTCTCTTGGCAGCCCTGGTACAGGGCTGCTGGATTTCTAACCCTTATTTCTCCAG
Seq C2 exon
AGTTCAACATTGGATGACCAATGCCCAATGGAGATCCGGTGCACAGAAGAGGGTCCTGGGCCTGGGATCTTCAGAGCAGAGTTGGGAGACCAGCAGCAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008058:ENSRNOT00000011107:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.179
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]