MmuINT1033423 @ mm10
Intron Retention
Gene
ENSMUSG00000032268 | Tmprss5
Description
transmembrane protease, serine 5 (spinesin) [Source:MGI Symbol;Acc:MGI:1933407]
Coordinates
chr9:49101989-49106216:+
Coord C1 exon
chr9:49101989-49102823
Coord A exon
chr9:49102824-49106113
Coord C2 exon
chr9:49106114-49106216
Length
3290 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TTCAACCACTATTTCTCCAGAGT
3' ss Score
5.81
Exon sequences
Seq C1 exon
GGAGGCTGAGTGGGAGAACTGTATTCTGGAGAGATTTGACTCTAAAGCCTGTGCTATCGAATTGATGCATCAGAGGGATCCATGAACGGCAGACTGGAGGAGAGCACCCCACTCTAGTGCCTGCTTCCCTGGTGCCCCTTGGCTTCTCCTTTTAAGAGACATGGCTCCAGGTGTGTCCTGATCCAGCCCGGGATCGGCTGCATTATCTTGAACACTGAAACAAGATCGCACCAATGGCTACTGGATCCCAGGGGTGAACTGGGTGAGGTGGCCTCACTTCCTAGCAATCAGGAGAAAGGTGCACCATGGATACCTCATGGTCATTGTCAGCTCTAACATGGTGACAGCCTGAGACTGCTGGGAAGCTTCCATAGAACTCAGAGACATTTCCACACATGCTAATATCTATCACTCTTTAATGCAGCCCTGTCAGCAAGAAGGGGAACTGTGCTAGTATATACAGGAGACACATTTTTTGGCACAAGAGACCTGGTTGCTAAGCAACAGTAGCCTGCCCCACCTCCCTATTTTCTGTTTCCAAGCTTCCAGTTAGCAGATAGCAGGGGCTGGGGCTGCCAGGCCCAGCCCAGCCCTTGCACTGATCCTCTACAACAAGGGGGCCTATTCATGGGCCCTGAGCATAGTTCATTGTCTCTCTGGTGCGTGTCTATGTGTGTAGGGGTGGGAGACAAGGGGAGGGGCTATGTGTGAACCAGGAAGACTTCATCCTCCAACCACACTGGCTGGGCTGTTGAATCAATCCTGACATGAGGACAGGAGCCTCACCCTGCCCAGCAGAACTTACTGCCTTATATCAGTGCAGCTGACTCATATG
Seq A exon
GTAAGGTGACGCCCCTGCCATCCCTCCAGTCCTGCTCACCCTCTACCCTGTGGGATGCAAGGTTGTTAGAAGAGCCTCTTCTGGCAGCTCTGGGATAGGAATTGCATCCTAGCATGAGCTATGAAGCTATGAAGTTTTCTCCAGAGGATGCCTTTCTCTTGCCATCGCTACTCTGGGCTGATAAAGCAGTTTACACATGGCTGTACTGAGCAAAGCATTAAAATGGACTCCTACTTAGTATAGCAAAGAGATGTCTTTCCATCGGAGGCCTGAGTTTTCAGGCTATAGCATGAGTTTGGGCAGGTTGTATTTTGAGGCGGGGCAGTGCATGAGACAAGGTGATTAGGTGAGAGGCTGGGCTTGAAGTCTAATGTCTTGGATATTAAGACAAGAGGGAAGCCTGTGTGTGTGTAGAAAGTGCTACCTATCTTGATTCTTCTCTTCCTTTCCTTCCTTGGTTCTTTGGTTCCTTGGTTCCTTGGTTCCTTGGTTCCTTGGTTCCTTGGTTCCTTGGTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTTTCCCTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTCTTTTTCTGGAGACAGCATCTCTTATTGGTTTCTTATTGGTTTGGCTAGGCTAGCTGGCCATCAAGCCCCAGAGATCTAGAATTAATATCAAGTGCTACCAGGCCCTGGGTTTACATAGGTTCTACAGATAGAATTTAAGCTCTCATGATTTCATGGAAGCCCTTTACGGAACTATCTTTTTATGGAGCTGTTTTCTGGACCTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTCTCCTTTTCTTTTTCCCTCCCTCCCTTCCTTTCTTTCCTTCTTTTTTAAAGATTTATTTATTTGTGTGTATGAGTGCTCTATTTGCATGCATGCCTACATGACAAAAGAGGGCATCAGACCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGAAATTGAACTCAGGACCTTTGAATGAGCAGCCAGTTACACTTAACCTCTGAGGCATCTCTCCAACCCCAAATTATTTTTAAGTTTTTGTTTGTTTGTTTGTTTCTTCATTTTTTTTTTCATTTTTTTGGTTTTTGGCTTTTCGAGACAGGGTTTCTTTGTGTAGCCATAGCCTTCCTGTAAGTCACTCTGTAGATCAGGCTAGCCTCAAACTCAGAGATCTGCTTGCCCCTGCCTCTCTGTCTTCTTTTCTTCCTCTTCCTCCTCCCCCTCCTTCTTCTTTTTAAATTAGGCTTTGTTGTTGTTGTTGTTGCCAAGGCTGTCCTTGTGGATCTCCTCTTCCACCTCCAGAGTGTTGTGATTTCAGGCATCTTCCATTACATCCAGCTAGAATCTAGTTTTGAGATGCTATATTTATTCTATTGGATTACAAATTCATTGAGGAAGTATTTACAGCCTATATGCATTTCTTATTGATATTATTATAATTAACATGTAGCTTGTGTTTTATCCATAAAGCCCTTATTTTCCTCTATTCCTTCTTGTCTTCACCCCTCCTCCCTCCCTCCCTCCTTCCTATTCCCCTCCCTGTCCCTCTCTTCCTTTCTTCTTTCTCCTTCCTTACTTCCATGCCTTTTTGTGCCAGTCCTTGGTATGTGTATATATATATATACCAGTGCAGAAAGAAAGAGAAAGAAGTGAGGCCCATATAAGTGAATAATAAGTTTTCTTTAGTTAAGGACAGTCCCTGTAGAAATGACTGAAGTGTCAGAGGGAGGCTGTGAGGCAGAGGCATCAGACACAAAACCTGTGTAATGAGAGTGCCTGGAGGTGCCAAAGAATGGCATAGTACTATGGAGAGGGCTGGTGCTGGCAGCAAGAATGGAGAGATGTGGAAGGGCAAGATCTCAAAAGCCTTGGAGCGCTGACGTGAGGCTTAGCTTTATGCTGAGGCTGCAGAGATTCACTGGATACTTTGAAGATTGGACCACCATCTTCATAATCGCATCTTAGAAAGATTACGCAGGCTTTACAACATGGAGACTATGGGCCAGGCCAGTGACCTAATCCTTTCCTGAGGATTGGGTTGACCACCCTATACCATCTACAACTAGTAGACACTAGGATGGGAGTTTAATCACTGGGAGGCAGGAGTTATCACTCTTATTTTATGGATGATAAATGATTAAAGTTTGGAGTGGTTGTCTGAGTTATTTAAGTTCACAGGATAGATGAAGACCTAGTTATGAACATTTCAGTGTTTGCAGTTATGCTATTTCATTGCTCATCATGGGTCAGGATCTTCTGGTGTGCATGTGAACTATCGTGCTCCTTTCTTTCTTAACCACCCCATCTTTGCTTCATCAATATCTTTTGCCCAGACCACACAATGCCTGACAGAAATAAACCAATGCAAGCCACACTCACTGAAGAGGACCCTGCTTTAGAGACTGTCCCCTCTAGAAGCCTTCCTTGATTGTCTTGGAGAAAAACCACCTCAATCTTTTGAATGCCATTGGTGCTTTTACTTGAACTCTTTGTGGTAATTTGACGTGTACCGTGACTTGTGTTTGGGAAAAGAATGAGAATTCTTTGAGGAATGATGGTTGATACTGAATTACTTAGCAAATCTTCTATGGTGGCTTATGAACTTTGGCCAAATACTTTTGGGGAATGATTGATGTGCGTGTGTGTGTGCATGTGTGTGTATATCCATCCTCTTCTTCTGAGACAGGAAGGAATGGAGGTATCTAGAGCAGGACATTGGCATGCCTCAGGGGGTGACCTTTTGGATGCTCACAGGAGCCAAGAAGAGAGCATGGTTAATGGAGAACATGAGCTCTGCAGTGGAGCAATCTGGATTCCAGTTTTCTCCTGGCTGTTGCAGCTGGATGAGAGCGAAGTGAATGGGTTAGGGGTTAGGAGAGCAGAAAGGGCCTGGACAGGCATCTCCAAGCTAAATAGAGACTTAGAGATAACCTTGGGGGCAGGGCTGAGATTAGACATGGGAATTTGGTGAGAGCATAGTCTTCTCTTGGCAGCCCTGGTGTGGGGCTGCTGGATCTTCAACCACTATTTCTCCAG
Seq C2 exon
AGTCCAACACTGGATGACCAAAGCCCAATGGAGATTCGGTGCACGGAAGAGGGTGCTGGGCCTGGGATCTTCAGAATGGAGTTGGGAGACCAGAGGCAATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032268:ENSMUST00000165088:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.338
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types