HsaINT0169734 @ hg19
Intron Retention
Gene
ENSG00000166682 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:14908]
Coordinates
chr11:113570788-113577068:-
Coord C1 exon
chr11:113576944-113577068
Coord A exon
chr11:113570891-113576943
Coord C2 exon
chr11:113570788-113570890
Length
6053 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
TCTGGCCCTTATTTCCCCAGAGC
3' ss Score
9.89
Exon sequences
Seq C1 exon
CCAGGGAGACCTCATCTTCCAACCAAGCTTGCTGGGCTAGCTTTAATCAATGCTGGCCTGAGAACAGGAGCGGAACATTGCCTAGTAGACCCTGAGGCTTTACAACAGTGCCACTGACCCCTATG
Seq A exon
GTAAGGTTACGTCTCTGTGCCATCCCTGCTGTGGCCTCTCTCTCTTTCTTTCTCTCTCCCTCCTCTGCCCTTGGGATTCTAGGCTGGTGGAAAGAGCCTCCTGAGGCAGCTCTGGTACAGGGGCTGGATCCTAGCAGGGGCCCTGTGTGGCCAATTTCCTGTTTCCTCCCCAGGGACTGCCCTTTATTATCCTCTTTCATCCCTCTTAGATCTATCAAGTGCTTTGCACATATGTGGTGCTCAACAAATCGTTATTACGTTGAACTTCCACTCAAAAAGAGGAGCAAGGAGTCCTGTAATTTTAAAGGCCATTTTTTTTTCTAGGCTAGCACATGAGCTTGGGCAGTTGAATTTTGAGGTGGAGCAGTACATGAGGTGAGGCCAGTTTATTCAGAGGCTGGGTTTAAAGCCAAGCTTCCTTGGTACTGAGGCAGAAGAAAAGACTGGCCATGCCCTGGAATTCTCTCTAGATCAGGCCTGCCTCTCCACTCAGAGGGACATCAGCTCAAGAGCAATCACACAACCCCAGAGAAGAAATCCAAACCTCACCTTCTGTTGCTGCTTCTCTACTATCTTATGGGTGCTTGACTGGCTCTCCCAAGCCTGCTGTCCTGCAGCCTCACTGCCTGTGTCCTGTGAGTCTCATCTGTAGGCACAAGAAAGAATGTGTGTGGTTTGATACAAACCATGACCTCTGTTTCTCCTGGAAAAGCAAGGCCTGCAGCTCTTGGGAGGTCCAGTCCTATAGGTCCTGGGCTGTGGCTGGTGTAGGGAATAGGGAGGTGGGGCTGGTACCTCTTTCTATAGGCAAGATGTTGGGGCTGCTGCGCTGTCTGTGAGCTGAACTGGCATGGGTGCTCTGGGTCCAGTGGAATGATTTTCGGGGCAATTTGGAGGTGACTGACCTAGGTGAGTCTGACAAAGTCTTTCCTTCCTCCTGCTGGAGGGTTAGGAAGACAGTTCAGTGGAGTACGAAGGCATGACTGGGGAGGTTTTGGCGTGAAAAGAACATTTCATGTGACACATGAAAATCACATTTAAGCCAATACTGTCCTGGAGTCAGCATTTCAGGCTTTTATCCTCATTGGGTACAACCCTATGTGTTGACAGGGAAAGATGCAGGGGAGACAGTAGTCTGCAGGGGAAACGGGAGTTGCTTCAGTTTTGAGAGATCTTATCTACCCTACTGGATTATAAATTTTGGGGGGAAGGATCCACAGCTTAGGTGTAGTTCTTATTAATATTATTATACTTAACATTTGTATTGGGCTTTACAATTTTTAAAGTCATTTTAATTCACATTATCTTATTTGTACCTCCCCCTCTGTCTCTCCCTCCCCCCTCCCTTCTTTCCTTCCCTCCTTTAATGTACTTTAACTGAATTCCCACTTTGTGCCAGGCTCTGTGCTTAGCCCTGGGATGCAAAAACCAGTGAGAAAGGAGAGAGAAGGAAGTAAATGAGCACAATATAGGGCCCAACAGGTGCTGTATGCATAGAAGGAAGCTTCCTGGAGAAGTGATGTCTGTGCTGAGTCTCGAAGGGTCAGTTGGAGTCAGTTACATGGGAAAGGGGAGAGCAGATGCAAAGTCTCTCTGTTGTGAGAGTGCCTGAAGGCACTGAAGTATGGCACGTATGTCAGTGTGATCCCAAATTTTGCTGTGGAGGGAGCAAGTGCTGGCAGTGAGGATGGAGAGGTGAGGCCAGGCGAGATCATGGAGGACTTTGTGAGCGATGCCATGGAGCTCCTGTTTGATCCTGAAGGCCACAAAGACTCATGGGGTAGAGATGGGGCTCACATGCTCATATTTGCATTTTAGAAAGATTACTCTGACTTTATGGCATGGAGAATAACAGAGAGAGACAAGATACTCGAGGAGGGAGATTATTCCTTGGAAAGCAGGAGTTATTACTCTTATTTTACAAATGAGAAAATTGAAATTTGAAGAGATGGCCTGAGTTGTCCAAGTTCACATAGTAGGTTGCAGACTTAGCTTTGAACTGTCTGGTGTTTTTTTTAAGATCTTATTTTCATTACTCCTCTTCATGGCTCATGAGCTGCAGACACACATATGACATACTCTGCTCTATGCTTTCTTATCCCTTTGCCTTTGCTGATTCAATCCTCTTTGTCTGGACTGCCCAATGCCCATTATATCAGCTCAAACCCTCTTCATCCCTGTGGGCCTGTCTCAGAGGCTGCTTTTTCTAGGAAGCCTTCTGTGATCACCTCAATGAGAAGTAAGCCCTTATTCTTTTGAATGATGATGGTAGTGTATTAGTCTGTTCTCACACTGCTATGAAGAACTGCCTGAGACTGGGTAATTTATAAAGGAAAGAGATTTAATTGACTCATAGTTCTGCATGGCTGGGGAAGCCTCAGGAAACTTATGATCATGGTGGAAGGGGAAGCAAACACACTCTTCTTCACATGCTGGCAGGAGAAAGAAGTGCAGAGTAAAGGGGGAAATCCCCTTATAAAACCATCAGATCTTGTGAGAACTCACTCACTATCATGAGAATAGCATAGGGGAACTGCCCCCATGATCCAATCACCTACTATGAGGTCCCTCCCCCAGTGCGTGGTAATTACAATTCAAAATTACAATTCAAAATGAGATTGTGGGTGAGGGGAGAGCCAAATCATATCATTCTATCCTGGTCCCTTCCAAATCTCATGTCCTCATTTCAAAACACAATCATGCCTTTCCAACAGTCCCCCAAAGTCTTAACTCGTTCCAGCATTAACCCAAAAGTCCAAGTCCAAAGTCTCATTTGAGACAAGGCAAGTCTCTTCTGCCTATGAGCCTGTAAAATCAAAAGCAAGTTAGTTACTTCCTAGATACAATGGGATACAGGCATTGGGTAAATACACCTATTCCAAATGGGAGAAATTGGTCAAAATAAAGAGGTTACAGTCCCCATGCAAGTCTGAAATCCAATAGGGCAGTCGTTAAACCTTAAAGTTCCAAAATGATCTCCTTTGACTACATGCCTTATATCCAGGTCACGCTGATGCAAGAGGTGGGCTTCCATGGCCTTGGGCAGCTCTGCCCTTGTGGCTTTGCAGGGCACAGCCCCACTTCTGGCTGTTTTCATGGGCTGCAGCTTTTCCAGGCTCACAGTGCAAGCTGTTGGTGGATCTACCATTCTGGGGTCTGGAGGATGGTGGCCTTCTTTTCACAGCTCCACTAGGCAGTGCCCCAGTGGGAACTCTGTGTGGGGGCTCCAACCCTACATTTCCCTTCCATACTGCCCTATCAGAGGATCTCCATGAGGGCTCCATCCCTGTAGCAAACATCTGCAAGGGCATCCAGGTGTTTCCATACATCCTCTGAAATCTAGGTGGAGGTTTTCAAACCTCAGTTATTGACTTCTGTGCACCCGCAGGCTCAACACCACAAGGAGGCTGCCAAGGCTTGGGCTTGCACCCTCTGAAGCAATGATCTGAGCTGTACCTTGTCCCCTTTTAGCCATGGCTGGAGCTGATGCAGCTGGGACACACAGTACCATGTCTCAGGCTGCACAGAACAGGGGGTCCTGGCCTGGCCCACAAAACCATTTTTCTCTCCTGGGCCTCTGGTCTGGTAATGGAAGGGACTGCTCTGCGGGTCTCTGACATGCCCTGGAGATATTTTCCCCATTGTCTTGGTGATTAACATTTAGCTCTTCATTACTTATGCAAATTTCTGCAGCAGGCTGGAATTTCTCCTCAGAAAATGGGTTTTCTTTTCTATCACATCATCAGGCTACAAATTTTCCAACCTTTTATGCTCTCTTTCCTCTTGAACACTTTGCTGCTTAGAAATTTCTTCTGCCAGATACCCTAAATCATCTCTCTCAAGTCCAAAGAGCCACAGATCTCATGACAGTGTGATCTAGAACCAGAAATACCATTTGACCCAGCAATCCCATTACTGTGTATATACTGAAAGGATTATAAATCATCTTACTGTAAAGACACATGCACACATATGTTTATTGCAGCATTATTTACAATAGCAAAGACTTGGAACCAACTCAAATGCCCATCAATGATAGACTGGATAAAGAAAATGTGGCACATATACACCATGGAATACTATGCAGCCATAAAAAGAATGAGATAATGTCCTCTGCAGGGACATGGATGAAGCTGGAAGCCATTATTCTCAGCAGACTAACACAGAAACACCACATGTTCTCACTCATAATGGGAGTTGAACAGTGAGAATACATGGACATGGGGAGGGGAACAACACACCCCGGGGCCTGACTGGGGGTGGGGGACAAGGGGAGGGAGAGCATTAGGACAAATACCGAATGCATACAGGGCTTAAAACCTAGATGACGGGTTGATGGGTGCAGCAAACCACCACGGCACATGTATACCTATGTAACAAACCTGCAAGTTCTGTGCATGTATCCTGGAAGTTAAAGTAAAATAAAAAAATTAAAAAAAAAAGAAAGACTATATGTCACATGGTTTCATTTATATGAAACTATAAAAAAGGGAACTCTAATATACAGTGAGAGAAACAGATCAGTGATTTTCCAGGGCTGTGAGTTGGGGAGGAGTTAACTGCAAAAAGGCAGAAGGAAAATTTCTGGGGTGACCTTCATGTCCTATATTTTGACTGTGTTGGTCATGTGGGTGTACACATTTGTCAAAGTTTTGATCTGAGAACTTAAAATGTATGTAATATTTTGAGTGTGCATTATGCCTCAATAAAGTTGAACAAAACACCCCCCCCCGCCAAAAAAAAACCACCAAAGTTCCACAGATCTCTAGGGCAGGGGCAAAATGCTTCACTTTTTTGCTAAAGCATAGCAAGAGTCACCTTTCCTTCAGTTTCCAAGACGTTCCTCATCTCCATCTGAGACCACCTCAGCCTGGACTTCATTGTCCATATCACTATCAGTATTTTGGTCAAAACCATTTAACAAGTCTCTAGGAAGTTCTAAACTTTCCCACATCTTCCTGTCTTCTTCTGAACCCTCCAAACTATTCCAACCTCTACCTGTTACCCAATTCCAAAGTCACTTCCACATATTTAGGTATCTTTACAGCAGCACCAATTTACTGTATTAGTTTGTTCTCACACTGCTATAAAGAATTACTGGAGACTGAGTAATTTATAAAGCAAAGAGGTTTAATTGACTCACAGTTCCTCATGGCTGGGAGGCCTCAGGAAACTTACAATCATGGCAGAAGGGGAAGCAAACATGTCCTTCTTCAACTGGTGGCAGGAGAGAGAAGTGCAGAGTGGAGAGGGAAAAAGCCCCATATAAAACCATCAGATCTTGTGAGAACTCACTCACTATCATGAGAACAACATTTGGGAACCAGCCCCATGATTTAATCACCTCCCACAAGGTCCCTACCCGAACATATGGGGATTACAATTTGGATTACAATTCAAGATGAGATTTTGGGTGGGGACACAGCTAAACCATATCAGGTAGTTTAGCTGAACTTTCCTTCTGTCACTTAACATATAGTGCTTTACATGACTTATCTTCAGGACCAGACTACAGGTTCTTTGACACAGTCAGAGTGGGGAGTGGTCCACGTTGGTTTATTCTGAACTCCCTATAGTGTCCCCTATAGTGACCTGTGCACTTGGACCAAATATCTATGGAATGAATGAATGGGTGGATGGGTGGGTGCATGGTGGAGGGGCACTTCTTCCTCTGAGATAGGAGGGAATGAAGAAGGGTGGGATCTTGAAGCTGAAGGAGTGTGTTGAGGGACTTTAGTAGATGCCTTCAATGTTTATGGAAGATGAAGGAGTGGCTAGGAGTGCAGGCTTTGGAGTGGGCCAAATCTGCATTCAAGTGTTTGCTACTGGCCATGTGAGAGTAAGGTCATTGGGGTTAGGGGCCCCAGGAGGGCACAGGGGAGCCTGGCAAGGTATTTGTGGGAATATACAGGGAGTCTCCAAGATGAGTAGAGGTTTACAAGTGGCAATGGAATCATGGCTGGGGTTAAAGAATGGGGACTTGGACTGGGCTGTGACTTCTCTCAGCAGTCCTTGATGTGGGGATCCTGGGTGTCTGGCCCTTATTTCCCCAG
Seq C2 exon
AGCCTGATGCTGGATGACCAACCCCCTATGGAGGCCCAGTATGCAGAGGAGGGCCCAGGACCTGGGATCTTCAGAGCAGAGCCTGGAGACCAGCAGCATCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166682-TMPRSS5:NM_030770:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.743
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)