MmuINT0163311 @ mm9
Intron Retention
Gene
ENSMUSG00000026725 | Tnn
Description
tenascin N [Source:MGI Symbol;Acc:MGI:2665790]
Coordinates
chr1:162052786-162055747:-
Coord C1 exon
chr1:162055484-162055747
Coord A exon
chr1:162053050-162055483
Coord C2 exon
chr1:162052786-162053049
Length
2434 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
ATCATCTCTTTCTCTTTTAGATA
3' ss Score
12.62
Exon sequences
Seq C1 exon
ACATCGACAGCCCCAAAAACTTGGTAACTGACCAGGTGACAGAGAACACTCTCAGTGTCTCCTGGGACCCTGTTCAGGCCAACATTGACAGGTATATGGTGAGCTACACCTCTGCCGATGGAGAGACAAGAGAGGTCCCAGTGCCTAAGGAGAAGAGCAGTACCGTCCTGACTGGCCTGAGGCCAGGTGTGGAGTACAAGGTCCATGTGTGGGCCCAGAAGGGGACCCAGGAGAGCAGAAAGGCCAACACCAAGGCCCCCACAG
Seq A exon
GTAATGGGACACGCATTGCGCTGTGCATGAGATGGCGAGGTTGGCTTCTCCCTCTCTGACATGATTTTGTTGATTAGAGGCAATGATGCTCCCTCCGGAATTGTATACCTCCTTCTCTTACAATGCATGTCTTACACTGTAAGTCTCTAAACCGTGGTCTTTACAGACTGATGCTTCCTGCTTACAGCCTCCCCTGCTTGCCTCTTCTTCTGCCTGTGAAGATGATTTGCCATTAGACCTAAGTGTTTCACTCTGGCAGGAAGCAAATATGAAGGGAGTGCAAGCAACTGTCAGGCGGAGAGAGCCAGCCTTGTAAGGTTGTGATCCACCAACAACTTCTTTTTAAAAAATCCGCGCTTGTTTAGACCCTTCCCATGAAGTTTGTTCCTGTTTCTGCCCTTCGGATGAGTGCTGTAGGCAGAAATAATTGCAGTGTTTTGTTCTCTACAAACAAGCCAGCAACTAGTCCCCCCTGTGTTGACTTTTTTAGTAATGAAAATGTCCATTTCCATGTATGGGCCCATCCTTCATTTGCAGTTAGCCATTTGCATGCTAACTGCTTGCTGTGGGAAGCGGTACTGCTCAGCTTTTCTTCTGTTTTCCTCCTTGAACTTTAGGTCCCTTCCTTTCCGCTGGCTAACTCTCATTGTTTTCCATCCTGACCCATTACCACTCCTTCCTCCTAATCTCCTAGCGCTCTTCATTTAGTGGTTGGTTGATTCAAGGTTGGTTAGCTGAGGACCCCCAAACTGCCCTGATGGTGTCACCTCACCCTTCTAGCTAGTCCTCCAGGACAGCTCCTGACACGATCCCCAAGCACTTTCTCAACTGATGTTCAGTTCATGGGAACTGCACCCCCCATGCTCTTTGTGAGAGCATCCTGCCATTTTCTCACTGATGAAGAATTTTAGCCACATGTCAAACACCTGCTGATGTGTTCCCCGTGCTTTAGAAAGGGTGTCTCAACCTCGGCGCTGCTGACATTTGAGCAGGACAATCCTTTGTTGCGGGGCTCTTTCTTTTGTGTTGGAGAATGCATAGCACACCCTGTATCTCCCTTTCCTCTGCCAAGTTGTAGCTGTCAGAATGTCTTAGGCATTGCTAATCAACCTGGCTGAAATCTTTTGCTCTATAGCAAACACAGTAAGCCCTACCAGGGATCGAGGTGAAACAGATTAAAGTTCAGACCTCACCCAAGGTACACAAAGTCTTTTTATGTAATTCCAGTTTCTGAGTCCTAACATACTGGCCTCTCCAACTTCCTTAATAACTGGACATGTTTATAACCATGTTAGCCAAGGACCTTAAAACTATTGATCCCTCCTTACCTGTGGGCTTCCAGGTGGGAAGTTAGATACCATTTTTCTTGAGGTCATAGCCTAAAGCAACATATGAAATAGAACCTTTGAACAAATCACCTTAGGAAAATGGCTTTTTTAATGAACTTCTTTAAAAAAAAGAAAATATTACTAGTTTATTGATAAAATATATTTTCAATTACTTTATGTTATGTAGTATGGAGGACAAAAATCCCTTGGATTTATAAAGTGTCAATGAATTGATCTCATCATAGTAATGATAGTTGAAGGTTTGCACATCTACCTGGTGCTAAGAACAGTCCTAGCATGTGATTAACTCATAGGATCTAACACTATGATGTAACACCTTTACAAGATATAAATCAATATCTTCCATATTCCATTTTTGTTTCCTCTTCAGAAGAAATTGAGGCACAAGGGCTGGGATGCCTTTTACCAAGTTTTGAATCTCAGAATGAATCTTCTGTGGTCCTGAAGCTGTAAACATTGTTTTTATCTTACTTGGCAAAGCTAACCACACACACACACACACACACACACACACACACACACATACACACACACACACACACACCTAAACATTTTCTACTTTACAAATGCAGAACAGAGTAAAGCAACTTGCCCAAGTATTAAAACTAAGTTAATAATTGATGAAAATAGATGGACATGTTGAATATTGGTACCTCAAAGTCTATAAAAGAGTCTCTCTCTAATCTTAGAGATGAGGAAGCAGAGCTTAGAGACAGGCAGCTGAATTGCCAGAAGCTGGCTATCAACTGGATGATGGCAGAGCTGAGACGAAGTTCTTGGTCTGCTGACTGGAACCCAAGGGATTTCCTGCCCTCAGCAATGCTTCTGAAGGTAGAACATATAGAACATAAAGATCCTTTGGACTTTACAGTTTCTTGGATGCAGTGTTCATTCCAGTGTCCTGTGCTGTCCCCCTGAGGCTCTGAGGTCAGCTGTGGAGACAAGGTCTCTGTCCATGAAGCACTGAAGATACATATCCAATATGGAGAAACCTTAAGAACTGGAAACTCTCCCAGCCCAGGCCCAATGGTCTCAGTTTCTGGAGCCTGTTACTAGTGTCTACTGATCATCTCTTTCTCTTTTAG
Seq C2 exon
ATATTGATGGCCCCAAAAACCTGGTGACTGACCAGGTGACCGAGACCACTCTTAGTGTCTCCTGGGACCCAGTGGAGGCTGACATTGATAGGTACATGGTTCGCTACACGTCTCCTGATGGAGAGACCAAGGAGGTGCCTGTGTCAAAGGATAAGAGCAGCACAGTCCTGAGGGGCCTGAGGCCAGGTGTGGAGTACAAGGTGGATGTATGGGCCCAGAAGGGGGCCCAGGACAGCCGGAAGGCCAACACCAAGGCCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026725-Tnn:NM_177839:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=NA C2=0.674
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
NA
C2:
PF0004116=fn3=WD(100=88.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: