BtaINT0150975 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015650 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr16:57808558-57812994:+
Coord C1 exon
chr16:57808558-57808821
Coord A exon
chr16:57808822-57812730
Coord C2 exon
chr16:57812731-57812994
Length
3909 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CACTTTTTTATCTCTTAAAGAAA
3' ss Score
6.42
Exon sequences
Seq C1 exon
AAATTGATAGTCCAACCAATGTGGTCACCGACCGAGTGACTGAAGACACAGTGGCGGTCTCCTGGGACCCAGTTCGGGCGGTCATCGATAAGTACATGGTGCGCTACATCTCCGCTGACGGGGAGACCAAGGACACGGCGGTGCCCAGGGAGCAGAACAGCACTGTCCTGACAGGCCTGAGGCCGGGGGAGGCCTATGAAGTCTACGTGTGGGCTGAGAGGGGCAACCAGGGGAGCAAGAAGGTGGACACCACGGCCCTCACAG
Seq A exon
GTAACAGGAGAAGGGGAGTCGTCTCTCATTCTTATTCTCTCCCATCTCTAAATAAACAGACTTCCTCACGGCAGGGAGAAGATTGATTCTTGAATTAGGAGACCGAATCCCACCTAGCACCAGCTCTTTTGTTTGCAGGGGCAGGGGGTTGCCAAAGCAATTTTAAATTTCTTAATTATGAATTTTTCCCCTTTTTAACCTCAAGCAAAAGAGGTCATCCTTTTAATTTGAATCAGAAGGTCATACTTACGTGGGTTGAAATTCCACATGCGACTCCCTCAGAGCAGAGGAACACTTTCTAATTTTCATTTTTTTTTGGATGTGAAAACTCAAAACATTTGGCTGACAGTGAATTTGAATGCTTATCTCAGCTTGCAGTGATGGCACAGGCACTGTGTGTGTAATCTGGAGCTGTCTTTCAGACCATGAAAATGGTTTGCCTCCTGAGTCAACATTTACCAAGTGTACCAATTCTAACTTTATGCTTTCCGAAACTGTAAGGGCTCCCTCACTCCATCCCATCATTCTGCTTGGCTGGGGCCTGCAGGTGTTCTGAGGCTGCATGGGAATGTATATCCCAGACATTCCTTCTGCTTAAACCCTCCTCTGGCACCAACTTTGAATTCAGAAAGCCTAATCCTGGAATCCACGACGTCCCACACACGTGACAGGAATCCTAGAAAAGTATTCACCTATTGATAGACTTCTGTTTTGGACAGTCTCTTAGTGTCAAGATGCTCAGAAAAGCTGATAATCAATTAGCAATACGGTTTCAGAAGCTTGACTGTCCAAGTTTTAATCTCAGCTCTACCATTTATTAGCCGAGAGATTTGGGGTAACTTATTTCACTTCTGTTCCTCAGATTCTTGTCTATTAGATGGGGCACGTAACTCTACATCACTGGGTTAGTGTGAGGATTACATGAATTAATCCATGTAAGTACCTGACATAGAGGTGGTGGTGGTTTAGTTGCTAAGTTGTATCCAACTCTGGGACTGCATGGACTGTAGCCCTCCAGGCTCTTCTGTCCATGGGATTCTCCAGGCAAGAATAATGGAATGGGTTGCCATTTCCTTCTCCTGACCTAGGAATTGAACCCAGGTCTCCTGCATTGCAGGCAGATTCTTTACCAACTGAGCTACAAGGGAAGCCCCTACCTGACATAGAGAGTGCTACATAAATCATAGTTGTGCTTATTTCTTGCTTGGGCTGCTATAGCAAAACACCATGGGCTGGTTGGCTTAAACAACAGAACCTTATTTCCTGCAGTTCTGGAGCCTGGAAATTCCCATGATCTGGATGCCAGTTGATTCATTTATTGGTGAAGGCCCTCTTCTCGACTTACAGATGCTTCCTTCTTCTTTACGTGCTGGAGAGGAGGAGGTTCTGGTCTCCTCTTTTTCTCAGAGAGACATTAATCCCACCATGGGAGCCCCATCCTTATGATCTCATCTAAAGCTCATTCCCTCCCAAGGGTCCCTCCTCCAAATACCATCAAATGAGGGGTTAGATCTTCGACATATACATTTTGAAAAGACACAAACATTCAGTGCACAGAAATGTTAATCCGCATTTGACCTGGAAGCATTTCATGGTCCAGAGCCTCCTGAGGCCACGTGGTCTTTGTCTCCTCCAGGGGAAGAGGCAGTTGGCAGTAAGGGTGGTGAGATCTAGATTTGTTTAAAGTCAGGGTCAGAAAACCTTCTACAGAAGGCCAGAGAGTAAATATTTTCAGCTTTGGGGACCACACAGTCTCTGGTGGTCTACTCCACTCTGCCACTGAAATGAGAAAACAGCCATAGACAGTATGTAAATGAACTGGCATGACTGTGTTCTAATAACACTTGATTTATGTAATCAGGCAGTGGGTCAGATTTGGCTGATGGACGGACCGTAGATTACCAGATCCCGGGTTATATTACACGTGGCCTTCCATTTACCAAGATTTTGGGTGTTGTGAATAGAACACGTGGGTCAACCTTTTAAGAAAACATTTGTTTATTATTTATGTTGACAGTGCTGGATCTTCGTTGCTGTGCACGGGTTTTCCCTAGTTGTGGCGAGAGGCGCTAGTGGGGCTGCTCTAGCTGTGGTGCACGGGCTCTTCGTTGAGGTGGCCTCTCTGGTTGAGCAGCACAGGCTCTCGGCTCGTGGGCTCAAGTCGTTGTGGTGCACAGGCTTCGTTTCCCTGTAGCATGTGGGAGCTTCCCGGACCAAGGGCTGAACCCATGTCCCCTGCATTGGCAGGTGGATTCTTAACCACCGGACCACCGGGGAAGTCCCTGGGTCAACCTTTTTAAGACAGCGAAAGTTGTAATAAAGAAGAGGTTTCCCTGCTCACAGATGAGGGCGGTGTGAATAAGTACCACGGATTAGAGGAGCTACTGGTGCGGTGCTGCCGGGGGTGTCAGGCACGGAGCCGGGCTCTGGGGGTACAGAGGTAGAAGACACGGTTTGCGCTCATACGTTGCTCACAGTCCTCTGGGAGGAGAAGACAAGTGAAAAAGATAAAGTGCAGTGACTTACGTTGTGTTAGCATAACCCTGGAACTATGGGAGTCTGAAAAAAGGTAGGGGTGAGAGCGGTCATGGCAGCCCACAGGCGGAGGTGACGCCTGAAGAGTCTAGAAGGATGGGCGGCTGTTGGCAGTGGGAGCAGCCCATGCAAAGAAGGACAGGGAGGCCTGGCGTGCTGCAACCCATGGGGTCGCAAAGAGCCAGACACGACTGAGCGGCTGGACAGCCAAGGTGTGGGAATATGACAGGCTGGTTTTCATGGCTTAACATCAGCTTATCTTGGTAATGTTATCTTTAGTGGTATTTATGGTGGGTGGGTGAGTGAGAGGGGTGGAGTGTGGAAAGATGAAGCTGGGATGGAGAAGCCAGCTCCGAATCCCAGGATAAACTGTCCTTTCATGTCAGCTGTTGGTGGTACATTCCAGCTCCTGTGCTCCTTCTGGCATGTTCTCCCTTGTCTGTGTATCCCACCGAGCTGGCCTGGCCACACTGGCAAGTTATGGTGTAGAGGTCTGAAATAAAGCTGTTGTCATAGAAAGCTCATCCTTTCAAAGAGGTGGTTTTTGAAACAGGAGAGTAAAGGCATGCTAATCATTACACCTGATTCCTTAGGTTATTGACCTTTTAAGGGTTTACGTTTTGAGGACAAAGTGATATTTCATACCTTAAGTGACATTCGTAATAGCAAAGAGCTCATATTTAAGATTTACTATGCAATATCTCATTTACCATTCATCATAAACAGAGGTAGGTACTGATATTTCCTTCTTTGTAGAGACAAGGAGACCAAGACTTAAGTTGTATAGTTTGTTCTAAGTTGGCAACCAGGATATAGTGGAACCCAGGTTTCAACTGCATAGAAACTCAGACAAGTAGGATTATTTTTATCCACCTAGACATCAAATACTTTAAAAGTCTCCAAGTTCTCTGGCCTCAGACATAATGTTTTATATGGAAAGAACTGACAGCTTCTACTTATTGGATATTTTTTTTCCAAAAGAAAATATTAGATCTGATGCAAAGATTTATTGAAGTGTAACTGCTTTCCAGTATAAGGAGTCAGGAACTAAAAGAGTACATTATGTAAATCCAGGGTAATGGAGAAATGTGTATATGAAGACAAATTCTTTTTATTCAAAGGCAACTTGTAGAGAAAAGTTTATAGAGTTGAGACTCAATATAGGCTTTGTCTGTAAACCTTACTTTTCATTAAATGCAAATGGCTCATTCTTGGAAATTTCAGACCACTTGCTTAATTAAACCCATAAGTTATCCCAACTATTGGCATATAACACACTCTGAAATTTGTTGAGGTCATCATTTTGGTTGTTTGTGTGCTGGCCTTTCACAAATTAGTGAGTTGGCAAATGGTACACTTTTTTATCTCTTAAAG
Seq C2 exon
AAATTGACAGCCCTCAGAACCTGGTGACAGAGCAGGTGACGGAGAACACGGCCACCGTCTCCTGGGACCCGGTGCAGGCCGTCATCGACAGGTACCTGGTGCGCTACATCTCTGCTGACGGAGACACCAGGGAGGTTCCGGTGGGGAAGGAGCAGAGCAGCACCGTCCTGACGGGCCTGAGGCCGGGTGTGGAGTACACGGTCCATGTGTGGGCGCAGAAGGGGGACCGGGAGAGCAGGAAGGCTGACACCAAGGCCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015650:ENSBTAT00000020785:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.551
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
NA
C2:
PF0004116=fn3=WD(100=88.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development